sruthipsuresh
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e360617ac6
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Fixed images, genomecov
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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e3bbbb48fc
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Fixed slop file
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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957983bd99
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Fixed and tested 4 modules, keeping with fastp module syntax
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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295fff35ec
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Corrected containers and tested
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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19b55fc67c
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Fixed intersect, complement indentation issues
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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3da39dfc88
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Fixed bedtools complement module
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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8496427c56
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Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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fc8cdde2b4
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Apply suggestions from code review
Add all initial suggestions from review (syntax issues)
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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e5c21d15a3
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Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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bf2703f396
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Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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93f640154a
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Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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ced2458d78
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Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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29639c522f
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Corrected sort
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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70de0331a5
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Corrected pytest and config
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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a108bd407e
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Corrected md5sum and output
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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2f19b4279c
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All modules corrected, TODO config
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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6e7feb9e57
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Update main.nf
Fixed prefix
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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32564137fd
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Corrected workflows and ran editor config
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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672f94f2af
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rebased and updated all bedtools testing and modules
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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78473edb72
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Removed large testing files, will convert to updated testing
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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4ada27479a
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Removed nextflow file
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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4fca435120
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Fixed naming issues and links in meta.yml
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2021-01-29 23:17:44 -06:00 |
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Edmund Miller
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178becdd69
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style: Run yaml-lint against files
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2021-01-29 23:17:44 -06:00 |
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Edmund Miller
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b16226c09c
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fix(bedtools): Add header param
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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a984c1be7c
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Added all modules with basic functionality and updated meta.yml files.
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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89e5473b44
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Updated modules with the changed container format
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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6677c98b11
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Updated complement and completed slop module with all parameters available.
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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199dfc5ea3
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Added complement module with necessary test dir/parameters
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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709970e9af
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Completed slop module for modules with test directory and updated meta.yml file
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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5205ce286a
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Added all modules using bedtools in the enhancer transcript identification section
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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637b545168
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Removed extraneous modules and updated removegenes module
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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1426d89440
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Completed sloprefseq and removegenes modules (main.nf, meta.yml and functiosn.nf file). Also added the test directory with input/output/main.nf files.
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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5b2633757e
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updated test file and main.nf file
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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521c87f999
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Updated test.mainnf file.
Added the necessary chrom sizes input and changed test file to directory (as specified in nfcore).
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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fefbdb9893
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Created test file for checking code.
Still need to add parameters map and chrom sizes path.
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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185ca19930
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Added module for slopRefseq, including meta.yml, functions and main
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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352a48741f
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updated test file and main.nf file
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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5a997c5ac6
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Updated module, need to fix cardinality of tuple
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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022b0bfe54
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Updated test directory with input files, corrected main.nf and config. Additionally, main.nf for the process was updated.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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74f1a62fa4
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Corrected errors in naming.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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ec6ebe086f
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Updated test.mainnf file.
Added the necessary chrom sizes input and changed test file to directory (as specified in nfcore).
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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898c0775c6
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Main.nf for bedtools module added.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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a654c0f5fa
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Created fixbedcoordinates functions.nf file
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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c8f30720a1
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Created meta file for the fixbedcoordinates module.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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8d6d48f067
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Created test file for checking code.
Still need to add parameters map and chrom sizes path.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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5f705f69e1
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Fixed version error in bedtools.
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2021-01-29 23:17:44 -06:00 |
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sruthipsuresh
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fe2e27c793
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Update main.nf
Updated bedtools module with updated container version and upstream/downstream values.
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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69f9f1cc89
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Updated with removegenes folder (with meta, main and generic function file).
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2021-01-29 23:17:44 -06:00 |
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Sruthi Suresh
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cfe8a490d8
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Added module for slopRefseq, including meta.yml, functions and main
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2021-01-29 23:17:44 -06:00 |
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Harshil Patel
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b260192942
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Merge pull request #149 from heuermh/minimap2
Add minimap2 align module
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2021-02-07 16:37:26 +00:00 |
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