Aleksei Korzhenkov
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848ee9a215
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Improve descriptions for modules with missing
Description and keywords
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-07-06 12:03:08 +02:00 |
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Maxime U. Garcia
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409af2f27c
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
* feat: code polishing
* Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
* code polishing
* more code polishing
* code polishing
* tests for applybqsrspark
* fix typo
* no need to check md5sum for versions.yml
* fix: use correct syntax
* code polishing again
* add tests for markduplicatesspark
* simplify mergevcfs tests
* add tests for baserecalibratorspark
* fix: path to entry
* code polishing
* fix linting
* simplify module
* update meta.yml
* fix pair mode
* fix: MITO mode
* more tests
* fix command
* bad copy paste
* fix typos
* fix tests
* fix test
* update meta.yml
* correct versions.yml in all test.yml
* code polishing
* code polishing
* more code polishing
* fix args
* add tmpdir for all
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-12 17:15:39 +02:00 |
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Matthias Hörtenhuber
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e745e167c1
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Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-02-15 11:15:27 +00:00 |
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FriederikeHanssen
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a9dd46f010
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add gatk4/gatherbqsr (#1130)
* nf-core modules create
* add module files
* indent
* remove templte code
* manually revert pytest changes from tools
* manually revert pytest changes from tools
* add include statement back in
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2021-12-08 23:43:36 +01:00 |
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