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abacas
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Move assembly test files from genome to illumina (#441)
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2021-04-13 12:52:11 +02:00 |
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adapterremoval
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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allelecounter
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
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artic
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Add artic minion (#486)
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2021-05-07 16:37:35 +01:00 |
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bandage/image
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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bbmap/bbduk
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Bbmap/bbduk (#487)
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2021-05-10 11:45:52 +01:00 |
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bcftools
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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bedtools
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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bismark
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Fix 459 (#534)
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2021-06-14 12:24:59 +01:00 |
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blast
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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bowtie
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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bowtie2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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bwa
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Fix number of cpus for modules with piped tools (#499)
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2021-05-18 09:52:00 +02:00 |
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bwamem2
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Fix number of cpus for modules with piped tools (#499)
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2021-05-18 09:52:00 +02:00 |
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bwameth
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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cat/fastq
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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cnvkit
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
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cooler
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Cooler digest (#517)
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2021-06-09 11:39:22 +02:00 |
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cutadapt
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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damageprofiler
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damageprofiler (#545)
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2021-06-30 09:46:24 +02:00 |
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deeptools
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Finish deeptools modules (#442)
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2021-04-13 21:48:43 +01:00 |
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dshbio
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Update dsh-bio modules to version 2.0.4 (#482)
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2021-05-04 14:28:44 +01:00 |
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fastp
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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fastqc
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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fasttree
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adding fasttree module (#412)
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2021-04-08 18:15:23 +01:00 |
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fgbio
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Update and check tests are running for all modules (#420)
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2021-04-09 13:47:05 +01:00 |
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flash
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
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gatk4
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Intervallisttools (#491)
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2021-05-12 11:44:36 +02:00 |
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genmap
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add genmap/mappability (#509)
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2021-05-25 22:12:10 +01:00 |
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gffread
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Fixing a bunch of module tests (#370)
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2021-03-24 17:36:29 +00:00 |
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graphmap2
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add graphmap index and align modules (from nanoseq modules) (#468)
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2021-04-30 13:18:58 +01:00 |
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gubbins
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Update gubbins module to use new files (#417)
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2021-04-09 07:54:11 +01:00 |
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gunzip
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
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hisat2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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hmmer/hmmalign
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New module to use hmmalign from HMMER to align sequences (#470)
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2021-04-28 11:21:24 +01:00 |
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homer/annotatepeaks
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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iqtree
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add new iqtree module (#427)
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2021-04-12 09:45:56 +01:00 |
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ivar
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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kallisto/index
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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kallistobustools
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Added kallistobustools/count (#409)
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2021-04-30 07:27:17 +02:00 |
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kraken2/run
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Add kraken2 pigz multi-tool container for compressing output fastq files (#434)
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2021-04-12 18:47:34 +02:00 |
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last
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Update last module (#533)
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2021-06-14 12:27:27 +01:00 |
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mash/sketch
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🏋️♀️ new submodule mash/sketch🕺 (#426)
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2021-04-10 16:24:23 +01:00 |
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metaphlan3
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Add metaphlan3 module (#543)
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2021-06-25 08:15:15 +02:00 |
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methyldackel
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Fix 459 (#534)
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2021-06-14 12:24:59 +01:00 |
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minia
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Fixing a bunch of module tests (#370)
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2021-03-24 17:36:29 +00:00 |
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minimap2
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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mosdepth
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
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msisensor
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Fix 459 (#534)
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2021-06-14 12:24:59 +01:00 |
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multiqc
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Fix some module test after adapting test config approach (#379)
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2021-03-24 18:29:41 +00:00 |
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muscle
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update muscle (#542)
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2021-06-28 08:20:02 +02:00 |
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nanolyse
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add nanolyse module (from nanoseq modules) (#471)
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2021-05-05 11:20:09 +01:00 |
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nanoplot
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Nanoplot and sequencing_summary.txt for Nanopore test data (#364)
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2021-04-09 08:31:38 +01:00 |
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nextclade
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Bump new nextclade version (0.14.4) (#532)
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2021-06-09 14:12:21 +01:00 |
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optitype
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
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pairix
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add software/pairix (#508)
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2021-05-25 21:22:57 +01:00 |
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pairtools
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Pairtools select (#523)
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2021-06-23 15:58:31 +02:00 |
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pangolin
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Pangolin bump new version (3.0.5) (#531)
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2021-06-09 14:11:59 +01:00 |
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picard
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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plasmidid
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Bump plasmidid version (#460)
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2021-04-26 12:40:38 +02:00 |
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preseq/lcextrap
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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prodigal
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
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prokka
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
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pycoqc
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Add pycoqc module (#424)
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2021-04-12 10:52:14 +01:00 |
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qcat
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
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qualimap/bamqc
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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quast
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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rapidnj
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add rapidnj module (#421)
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2021-04-09 13:04:54 +01:00 |
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rasusa
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🧸 Updated rasusa (#437)
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2021-04-12 21:47:55 +01:00 |
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raxmlng
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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rseqc
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Finish rseqc modules (#439)
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2021-04-13 08:49:32 +01:00 |
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salmon
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Update salmon/quant to provide '--libType A' option (#536)
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2021-06-17 15:13:47 +02:00 |
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samtools
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Update samtools from 1.10 to 1.12 (#530)
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2021-06-07 13:07:32 +02:00 |
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seacr/callpeak
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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seqkit/split2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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seqtk
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Feat seqtk update (#503)
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2021-06-14 12:23:15 +01:00 |
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sequenzautils
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Update and check tests are running for all modules (#420)
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2021-04-09 13:47:05 +01:00 |
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seqwish/induce
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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shovill
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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snpsites
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Snpsites (#480)
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2021-05-06 16:05:07 +01:00 |
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spades
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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star
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
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strelka/germline
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
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stringtie
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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subread/featurecounts
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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tabix
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Add modules bgziptabix (#544)
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2021-06-25 10:52:02 +02:00 |
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tiddit/sv
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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trimgalore
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Update comments with new style (#497)
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2021-05-12 14:56:46 +01:00 |
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ucsc
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add additional ucsc tools (#506)
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2021-05-20 15:39:33 -04:00 |
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unicycler
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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untar
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Fix some module tests after switching to config data (#386)
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2021-03-24 18:28:07 +00:00 |
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vcftools
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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yara
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
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