.. |
abacas
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
adapterremoval
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
agrvate
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module for agrvate (#693)
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2021-09-16 12:42:23 +02:00 |
allelecounter
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
amps
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add Amps (#768)
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2021-09-30 12:54:16 +02:00 |
arriba
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Added module arriba (#611)
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2021-07-22 15:19:42 +01:00 |
artic
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
assemblyscan
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add new assembly scan module (#971)
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2021-10-29 10:01:23 +02:00 |
bamaligncleaner
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Add module: bamaligncleaner (#676)
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2021-09-15 10:31:49 +02:00 |
bamtools/split
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Update module: bamtools/split (#885)
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2021-10-23 19:39:27 +01:00 |
bandage/image
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
bbmap
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Add bbmap/bbsplit module (#771)
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2021-09-30 13:37:35 +01:00 |
bcftools
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Add bcftools/index (#812)
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2021-10-13 10:40:04 +02:00 |
bedtools
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Bedtools sort add extension choice input (#984)
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2021-10-29 13:22:17 +01:00 |
bismark
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
blast
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
bowtie
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
bowtie2
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
bwa
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
bwamem2
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
bwameth
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
cat
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Fix flash and cat/fastq modules (#759)
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2021-09-28 21:14:11 +01:00 |
cellranger/mkref
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new module cellranger mkref (#896)
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2021-10-28 13:33:57 +02:00 |
checkm/lineagewf
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New module: checkm/lineagewf (#899)
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2021-10-26 21:54:10 +01:00 |
chromap
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Chromap Module (#659)
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2021-09-15 17:20:55 +01:00 |
cnvkit
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
cooler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
csvtk/concat
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add csvtk/concat module (#785)
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2021-10-05 21:48:47 +01:00 |
custom/dumpsoftwareversions
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Correct parsing versions with trailing zeros (#795)
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2021-10-06 08:16:36 +02:00 |
cutadapt
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
damageprofiler
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fix: reduce number of required input files for damage profiler (#612)
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2021-10-20 10:02:30 +02:00 |
dedup
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Add module: dedup (#907)
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2021-10-28 12:10:21 +02:00 |
deeptools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
delly/call
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few version and test data config fixes (#758)
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2021-09-28 20:42:04 +01:00 |
diamond
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Diamond (#710)
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2021-09-23 09:13:04 +01:00 |
dragonflye
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add module for dragonflye (#633)
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2021-08-16 11:51:30 +02:00 |
dshbio
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Add dsh-bio export-segments module (#631)
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2021-08-17 15:53:41 +02:00 |
ensemblvep
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
expansionhunter
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Expansionhunter (#666)
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2021-08-16 17:47:42 +02:00 |
fastani
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module fastani (#695)
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2021-09-21 20:20:26 +01:00 |
fastp
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enhance module fastp: add save_merged (#598) (#614)
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2021-07-23 10:44:00 +01:00 |
fastqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
fasttree
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
fgbio
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Fgbio group reads by umi (#952)
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2021-10-29 14:00:54 +02:00 |
filtlong
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add filtlong (#919)
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2021-10-27 17:00:11 +02:00 |
flash
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Fix flash and cat/fastq modules (#759)
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2021-09-28 21:14:11 +01:00 |
freebayes
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add freebayes/somatic and update freebayes/germline (#990)
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2021-10-29 17:05:06 +02:00 |
gatk4
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
genmap
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
genrich
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Refactor genrich to avoid params in main (#981)
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2021-10-29 16:37:39 +02:00 |
gffread
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Fix bug in gffread (#686)
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2021-09-15 19:55:08 +01:00 |
glnexus
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Add glnexus (#729)
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2021-09-22 13:31:01 +01:00 |
graphmap2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
gstama
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New module: gstama/merge (#813)
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2021-10-23 19:00:39 +01:00 |
gtdbtk/classifywf
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Add gtdbtk/classifywf module (#765)
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2021-10-05 21:23:01 +01:00 |
gubbins
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
gunzip
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
hicap
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add hicap module (#772)
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2021-10-05 21:42:09 +01:00 |
hifiasm
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few version and test data config fixes (#758)
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2021-09-28 20:42:04 +01:00 |
hisat2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
hmmer/hmmalign
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
homer
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Homer Modules (#75)
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2021-09-08 15:40:34 +00:00 |
iqtree
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Module new version reporting fixes (#753)
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2021-09-28 10:51:19 +01:00 |
ismapper
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add ismapper module (#773)
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2021-10-05 21:55:41 +01:00 |
isoseq3
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Update isoseq3/cluster (#856)
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2021-10-14 11:07:53 +01:00 |
ivar
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
jupyternotebook
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Notebook modules (#617)
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2021-10-24 20:51:56 +02:00 |
kallisto/index
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
kallistobustools
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
khmer/normalizebymedian
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Khmer normalizebymedian (#985)
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2021-10-29 13:23:34 +02:00 |
kleborate
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Add module kleborate (#711)
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2021-09-21 20:45:42 +01:00 |
kraken2/kraken2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
last
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
lima
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New module: LIMA (#719)
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2021-09-27 16:14:35 +01:00 |
lofreq
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fix: lofreq/callparallel missing arg (#562) (#586)
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2021-07-19 09:19:27 +01:00 |
malt
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update: MALT build version bump (#699)
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2021-09-15 16:46:29 +01:00 |
maltextract
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add: MALTEXTRACT (#725)
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2021-09-21 19:57:27 +01:00 |
manta
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adding new manta/germline + manta/tumoronly modules (#906)
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2021-10-27 18:24:48 +02:00 |
mash/sketch
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
mashtree
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add mashtree module (#767)
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2021-10-05 21:27:30 +01:00 |
maxbin2
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New module: maxbin2 (#895)
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2021-10-26 22:07:33 +01:00 |
megahit
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Add MEGAHIT (#810)
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2021-10-12 16:06:06 +01:00 |
metaphlan3
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
methyldackel
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
minia
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
minimap2
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Add Racon module to nf-core/modules (#949)
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2021-10-29 13:33:38 +01:00 |
mlst
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added classic mlst module (#742)
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2021-10-05 20:49:46 +01:00 |
mosdepth
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
msisensor
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
mtnucratio
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Mtnucratio (#986)
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2021-10-29 15:02:02 +02:00 |
multiqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
muscle
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nanolyse
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nanoplot
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nextclade
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Update Nextclade to output all files by default (#638)
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2021-07-28 19:49:50 +01:00 |
optitype
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Updating test file for optitype (#782)
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2021-10-28 14:24:52 +02:00 |
pairix
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pairtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pangolin
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Update pangolin to 3.1.11 (#721)
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2021-09-20 19:59:05 +01:00 |
paraclu
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add paraclu (#909)
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2021-10-27 15:48:49 +02:00 |
pbbam/pbmerge
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New module: pbbam/pbmerge (#752)
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2021-10-05 23:16:45 +01:00 |
pbccs
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Update of pbccs (#835)
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2021-10-23 19:09:41 +01:00 |
picard
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Module new version reporting fixes (#753)
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2021-09-28 10:51:19 +01:00 |
pirate
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add pirate module (#777)
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2021-10-05 22:28:25 +01:00 |
plasmidid
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Fix yml ver (#756)
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2021-09-28 18:33:07 +02:00 |
plink/vcf
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Adding plink/vcf module (#656)
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2021-09-14 08:51:40 +02:00 |
porechop
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add porechop module (#914)
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2021-10-28 13:21:36 +02:00 |
preseq/lcextrap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
prodigal
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
prokka
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pycoqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pydamage
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Pydamage analyzer update (#863)
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2021-10-18 15:24:49 +02:00 |
qcat
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
qualimap/bamqc
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Fix more version commands (#750)
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2021-09-28 06:56:27 +01:00 |
quast
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
racon
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Add Racon module to nf-core/modules (#949)
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2021-10-29 13:33:38 +01:00 |
rapidnj
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rasusa
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
raxmlng
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rmarkdownnotebook
|
Notebook modules (#617)
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2021-10-24 20:51:56 +02:00 |
roary
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add roary module (#776)
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2021-10-05 22:08:47 +01:00 |
rsem
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Update checksum modules using human GTF (#900)
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2021-10-26 23:09:04 +01:00 |
rseqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
salmon
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Fix version commands (#749)
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2021-09-27 22:10:37 +01:00 |
samtools
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
seacr/callpeak
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I accidently deleted a branch before the PR merged for PR 800 (#881)
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2021-10-21 12:28:59 +01:00 |
seqkit/split2
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
seqtk
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New module seqtk/mergepe (#951)
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2021-10-28 16:53:33 +02:00 |
sequenzautils
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Fix version commands: round 3 (#754)
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2021-09-28 14:37:47 +01:00 |
seqwish/induce
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
shovill
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
snpdists
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module: snp-dists (#697)
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2021-09-15 16:36:49 +01:00 |
snpeff
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
snpsites
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
spades
|
nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
spatyper
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add spatyper module (#784)
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2021-10-05 22:21:35 +01:00 |
sratools
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Add a new module for fasterq-dump (#807)
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2021-10-12 14:20:58 +01:00 |
staphopiasccmec
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add staphopia-sccmec module (#702)
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2021-09-15 17:24:11 +01:00 |
star
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Update checksum modules using human GTF (#900)
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2021-10-26 23:09:04 +01:00 |
strelka
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Update strelka, by enabling BP if Manta candidates are present (#923)
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2021-10-27 17:49:54 +02:00 |
stringtie
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Update checksum modules using human GTF (#900)
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2021-10-26 23:09:04 +01:00 |
subread/featurecounts
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fix more ver yml (#757)
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2021-09-28 20:25:10 +01:00 |
tabix
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
tiddit
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Add TIDDIT cov (#822)
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2021-10-13 12:59:35 +02:00 |
trimgalore
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
ucsc
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New module: ucsc/liftover (#868)
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2021-10-21 18:04:15 +02:00 |
unicycler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
untar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
unzip
|
Unzip update (#730)
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2021-09-22 11:02:32 +01:00 |
variantbam
|
Add variantbam (#618)
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2021-07-26 19:07:29 +01:00 |
vcftools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
yara
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fix more ver yml (#757)
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2021-09-28 20:25:10 +01:00 |