nickhsmith 454e0acc09 Mpileup intervals (#1955) ... * update tests * update * update * make the manta inputs consistant for germline/somatic/tumoronly * match chromosomes to cram file (chr21) * undo genotypegvfs * undo genotypegvfs * include intervals * update md5 with interval Co-authored-by: Smith Nicholas <smith@in.tum.de>		2022-08-16 14:16:35 +02:00
..
ampliconclip	Improve descriptions for modules with missing	2022-07-06 12:03:08 +02:00
bam2fq	Test --no-name to solve inconsistent checksums	2022-05-03 15:18:09 +02:00
collatefastq	Add samtools/collatefastq module (#1536)	2022-04-20 10:05:17 +02:00
convert	rename aligned to alignment	2022-05-09 16:07:49 +02:00
depth	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
dict	Added the samtools/dict module (#1922)	2022-07-26 22:13:19 +01:00
faidx	Added support for ext.args in samtools/faidx (#1919)	2022-07-26 21:51:47 +01:00
fastq	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
fixmate	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
flagstat	samtools/*stats*: use prefix for outputs (#1788)	2022-06-16 13:42:01 +02:00
idxstats	samtools/*stats*: use prefix for outputs (#1788)	2022-06-16 13:42:01 +02:00
index	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
merge	small update to samtools/merge (#1896)	2022-07-18 11:37:45 +02:00
mpileup	Mpileup intervals (#1955)	2022-08-16 14:16:35 +02:00
sort	Samtools version update (#1507)	2022-04-11 14:26:28 +02:00
stats	more generic name because of multiple extension (#1880)	2022-07-14 11:42:00 +02:00
view	feat added stub to modules	2022-05-02 10:34:14 +02:00