.. |
abacas
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
abricate
|
add module for abricate (#1280)
|
2022-02-18 18:00:21 -07:00 |
adapterremoval
|
Refactor adapterremoval (#1491)
|
2022-04-04 21:40:35 +02:00 |
adapterremovalfixprefix
|
Add AdapterRemovalFixPrefix (#1424)
|
2022-03-21 11:26:12 +01:00 |
agrvate
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
allelecounter
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
amplify/predict
|
add module AMPlify (#1498)
|
2022-04-20 11:53:26 +02:00 |
amps
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
amrfinderplus
|
add amrfinderplus module (#1284)
|
2022-02-19 23:02:23 +00:00 |
antismash/antismashlitedownloaddatabases
|
Add antismash download DB: missing container folders as output channels (#1567)
|
2022-04-27 12:40:04 +02:00 |
arriba
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
artic
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
ascat
|
round the < to ( to make markdown work for meta.yml (#1395)
|
2022-03-16 13:29:11 +01:00 |
assemblyscan
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
ataqv/ataqv
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
bakta
|
update bakta to latest version (v1.4.0) (#1428)
|
2022-03-24 10:49:17 -06:00 |
bamaligncleaner
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
bamcmp
|
bamcmp (#1244)
|
2022-02-02 16:38:41 +00:00 |
bamtools
|
New module: bamtools/convert (#1219)
|
2022-01-28 09:58:25 +00:00 |
bamutil/trimbam
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
bandage/image
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
bbmap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
bcftools
|
bcftools/annotate follow up corrections (#1359)
|
2022-02-28 10:16:29 -05:00 |
bclconvert
|
Module/bclconvert (#1485)
|
2022-04-21 15:39:22 +02:00 |
bedtools
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
biobambam
|
New tool: biobambam/bamsormadup (#1478)
|
2022-04-06 08:18:23 +02:00 |
biscuit
|
Add core Biscuit tools (#1354)
|
2022-03-14 09:34:22 -04:00 |
bismark
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
blast
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
bowtie
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
bowtie2
|
Bump software versions for viralrecon modules (#1198)
|
2022-01-07 17:52:39 +00:00 |
bracken/bracken
|
Add bracken (#1423)
|
2022-03-22 16:40:21 +01:00 |
bwa
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
bwamem2
|
Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)
|
2021-12-08 14:31:27 +00:00 |
bwameth
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
cat
|
Update cat module (#1469)
|
2022-03-31 13:42:44 +02:00 |
cellranger
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
centrifuge
|
Add centrifuge_kreport module (#1514)
|
2022-04-13 15:33:51 +02:00 |
checkm/lineagewf
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
chromap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
clonalframeml
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
cmseq/polymut
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
cnvkit/batch
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
cnvpytor
|
Add stubs to cnvpytor module (#1473)
|
2022-04-01 17:35:15 +02:00 |
controlfreec
|
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)
|
2022-04-08 11:43:40 +02:00 |
cooler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
csvtk
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
custom
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
cutadapt
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
damageprofiler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
dastool
|
Update DASTool to 1.1.4 (#1471)
|
2022-04-01 11:33:07 +02:00 |
dedup
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
deeparg
|
Deeparg singularity container fix 2 (#1406)
|
2022-03-18 16:21:55 +01:00 |
deeptools
|
Add deeptools bamcoverage (#1316)
|
2022-02-18 09:35:41 +01:00 |
deepvariant
|
Update version & add intervals usage (#1214)
|
2022-01-17 16:40:31 +01:00 |
delly/call
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
diamond
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
dragmap
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
dragonflye
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
dshbio
|
Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format (#1207)
|
2022-01-17 09:24:40 +00:00 |
ectyper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
elprep
|
fix output glob (#1552)
|
2022-04-22 13:04:41 +02:00 |
emmtyper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
ensemblvep
|
greatly simplify syntax (#1121)
|
2021-12-07 11:18:12 +01:00 |
expansionhunter
|
add stub to modules used in raredisease pipeline (#1206)
|
2022-03-28 17:48:39 +02:00 |
faqcs
|
Faqcs patch to add tests for --debug output (#1368)
|
2022-03-02 08:53:05 -05:00 |
fargene
|
takes gunzip out of fargene main.nf (#1090)
|
2021-11-29 14:32:23 +01:00 |
fastani
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
fastp
|
Bump software versions for viralrecon modules (#1198)
|
2022-01-07 17:52:39 +00:00 |
fastqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
fastqscan
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
fasttree
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
fgbio
|
Added UMI sub-workflow (#1098)
|
2021-12-09 11:16:40 +01:00 |
filtlong
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
flash
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
freebayes
|
Update intervals (#1278)
|
2022-02-10 10:34:22 +01:00 |
gamma
|
new module: GAMMA (#1532)
|
2022-04-23 10:12:06 -04:00 |
gatk4
|
add intervals possibilities to splitncigarreads (#1571)
|
2022-04-27 16:03:44 +02:00 |
genmap
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
genrich
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
gffread
|
Replace remaining task.ext.suffix with task.ext.prefix (#1117)
|
2021-12-07 15:00:43 +01:00 |
glnexus
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
graphmap2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
gstama
|
New Module: gstama/polyacleanup (#1468)
|
2022-03-31 09:11:51 -04:00 |
gtdbtk/classifywf
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
gubbins
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
gunc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
gunzip
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
hamronization
|
Add hamronization/summarize (#1366)
|
2022-03-03 08:02:04 +01:00 |
hicap
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
hifiasm
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
hisat2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
hmmcopy
|
hmmcopy/mapCounter (#1175)
|
2021-12-17 15:39:50 +00:00 |
hmmer
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
homer
|
Fix homer/maketagdirectory output collision (#1456)
|
2022-03-27 03:17:42 +00:00 |
hpsuissero
|
add module for hpsuisero (#1331)
|
2022-02-27 17:58:35 -07:00 |
ichorcna
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
idr
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
imputeme/vcftoprs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
iqtree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ismapper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
isoseq3
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ivar
|
Patch fix artic/minion and ivar/variants modules (#1326)
|
2022-02-18 17:36:09 +00:00 |
jupyternotebook
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
kaiju
|
Kaiju2table module (#1545)
|
2022-04-22 11:26:30 +02:00 |
kallisto/index
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
kallistobustools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
khmer/normalizebymedian
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
kleborate
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
kraken2/kraken2
|
update to kraken2: breaking change - output channels renamed (#1525)
|
2022-04-21 14:33:59 +02:00 |
krona
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
last
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
leehom
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
legsta
|
add module for legsta (#1319)
|
2022-02-18 17:42:18 -07:00 |
lima
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
lissero
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
lofreq
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
macrel/contigs
|
Add new module macrel/contigs (#1109)
|
2021-12-09 13:17:50 +01:00 |
macs2/callpeak
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
mafft
|
Add MAFFT module (#1351)
|
2022-02-28 00:40:24 -07:00 |
malt
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
maltextract
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
manta
|
Revert manta changes (#1518)
|
2022-04-12 10:40:06 +02:00 |
mapdamage2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
mash
|
add module for mash dist (#1193)
|
2022-01-04 17:29:49 +01:00 |
mashtree
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
maxbin2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
medaka
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
megahit
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
megan/rma2info
|
Add MEGAN/RMA2INFO (#1513)
|
2022-04-12 08:35:36 +02:00 |
meningotype
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
metabat2
|
Update metabat2 output channels and compression (#1111)
|
2021-12-09 15:00:32 +01:00 |
metaphlan3
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
methyldackel
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
minia
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
miniasm
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
minimap2
|
Update minimap2/align module (#1537)
|
2022-04-26 16:32:20 +02:00 |
mlst
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
mobsuite/recon
|
add mobsuite_recon module (#1270)
|
2022-02-18 17:52:38 -07:00 |
mosdepth
|
Update mosdepth (#1256)
|
2022-02-09 12:45:55 +00:00 |
msisensor
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
msisensorpro
|
Add msisensorpro (#1267)
|
2022-02-09 21:05:49 +01:00 |
mtnucratio
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
multiqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
mummer
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
muscle
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
nanolyse
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
nanoplot
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ncbigenomedownload
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
nextclade
|
Bump Nextclade version to 1.10.1 (#1236)
|
2022-01-27 12:53:14 +00:00 |
ngmaster
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
ngscheckmate/ncm
|
New module: NGSCheckMate (#1290)
|
2022-03-11 09:02:10 +00:00 |
nucmer
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
optitype
|
Add BAM indexes as input for optitype module. (#1388)
|
2022-03-15 17:02:40 +01:00 |
pairix
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
pairtools
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
panaroo/run
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
pangolin
|
Bump Pangolin version to 3.1.20 (#1296)
|
2022-02-15 10:46:20 +00:00 |
paraclu
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
pbbam/pbmerge
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
pbccs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
peddy
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
phantompeakqualtools
|
Add task.ext.args to phantompeakqualtools and finish the module (#1474)
|
2022-03-31 22:59:21 +01:00 |
phyloflash
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
picard
|
update picard/collecthsmetrics (#1542)
|
2022-04-22 10:13:57 +02:00 |
pirate
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
plasmidid
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
plink
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
plink2
|
implement plink2/score module (#1259)
|
2022-03-07 13:02:40 -05:00 |
pmdtools/filter
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
porechop
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
preseq
|
Split preseq lcextrap and ccurve (#1440)
|
2022-03-25 17:11:40 +00:00 |
prinseqplusplus
|
Add PRINSEQPLUSPLUS (#1481)
|
2022-04-03 16:06:22 +02:00 |
prodigal
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
prokka
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
pycoqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
pydamage
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
qcat
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
qualimap
|
add qualimap with cram files + remove val from qualimap/bam, instead use empty list as everywhere else (#1320)
|
2022-02-18 09:43:53 +01:00 |
quast
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
racon
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
rapidnj
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
rasusa
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
raven
|
Raven assembler (#1087)
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2022-02-01 11:47:01 +01:00 |
raxmlng
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
rgi/main
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add module for rgi (#1321)
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2022-02-18 17:23:44 -07:00 |
rmarkdownnotebook
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
roary
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Update test.yml (#1419)
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2022-03-19 15:06:21 +00:00 |
rsem
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Bump STAR version to 2.7.10a for RSEM modules (#1573)
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2022-04-27 19:21:26 +01:00 |
rseqc
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Provide BAI when running rseqc/tin (#1177)
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2021-12-17 10:00:09 +00:00 |
salmon
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
samblaster
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Samtools version update (#1507)
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2022-04-11 14:26:28 +02:00 |
samtools
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add samtools/bamtocram modules (#1561)
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2022-04-25 14:32:49 +02:00 |
scoary
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
seacr/callpeak
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
seqkit
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feat: add module for seqkit stats (#1466)
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2022-03-30 23:01:17 +02:00 |
seqsero2
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
seqtk
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Decrease indent in seqtk/seq versions.yml output (#1384)
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2022-03-09 11:56:35 -05:00 |
sequenzautils
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
seqwish/induce
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
shovill
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
sistr
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add module for sistr (#1323)
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2022-02-18 17:33:48 -07:00 |
snapaligner
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Tool/snap aligner single (#1510)
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2022-04-12 11:20:35 +02:00 |
snpdists
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
snpeff
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greatly simplify syntax (#1121)
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2021-12-07 11:18:12 +01:00 |
snpsift/split
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Added new module snpsift/split (#1031)
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2021-12-17 09:08:14 +01:00 |
snpsites
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
sourmash/sketch
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feat: add sourmash sketch (#1287)
|
2022-02-15 12:30:28 +01:00 |
spades
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
spatyper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
sratools
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Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
srst2/srst2
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adding srst2 module
|
2022-04-27 18:01:28 -04:00 |
ssuissero
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add module for ssuisero (#1329)
|
2022-02-27 20:04:03 -07:00 |
stadeniolib/scramble
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new tool: staden_io_lib (#1499)
|
2022-04-08 09:54:15 -04:00 |
staphopiasccmec
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
star
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
stranger
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add stubs for stranger (#1543)
|
2022-04-22 10:10:43 +02:00 |
strelka
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Update intervals (#1278)
|
2022-02-10 10:34:22 +01:00 |
stringtie
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Rename process from STRINGTIE to STRINGTIE_STRINGTIE (#1546)
|
2022-04-22 15:13:06 +01:00 |
subread/featurecounts
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
svdb
|
update svdb to version 2.5.2 (#1390)
|
2022-03-21 10:39:34 +01:00 |
tabix
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add decompress possibilities to bgzip (#1540)
|
2022-04-20 16:26:56 +02:00 |
tbprofiler/profile
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
tiddit
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
transdecoder
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Transdecoder predict (#1251)
|
2022-02-02 09:46:07 +01:00 |
trimgalore
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
ucsc
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ucsc/wigtobigwig: add meta map (#1199)
|
2022-01-11 21:31:37 +00:00 |
ultra/pipeline
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
umitools
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Add tests for umitools extract and dedup (#1429)
|
2022-03-25 14:25:07 +00:00 |
unicycler
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
untar
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
unzip
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
variantbam
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
vcfanno
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
vcflib/vcfuniq
|
Add new vcflib/vcfuniq module (#1208)
|
2022-01-14 18:18:11 +00:00 |
vcftools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
yara
|
Add samtools index to yara_mapper module (#1353)
|
2022-03-04 10:08:02 -05:00 |