.. |
abacas
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Move assembly test files from genome to illumina (#441)
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2021-04-13 12:52:11 +02:00 |
adapterremoval
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
allelecounter
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
artic/guppyplex
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Add artic guppyplex (#455)
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2021-04-27 15:57:34 +01:00 |
bandage/image
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
bcftools
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
bedtools
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
bismark
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
blast
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
bowtie
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
bowtie2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
bwa
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
bwamem2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
bwameth
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
cat/fastq
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
cnvkit
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
cutadapt
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
deeptools
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Finish deeptools modules (#442)
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2021-04-13 21:48:43 +01:00 |
dsh
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
fastp
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
fastqc
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
fasttree
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adding fasttree module (#412)
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2021-04-08 18:15:23 +01:00 |
fgbio
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Update and check tests are running for all modules (#420)
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2021-04-09 13:47:05 +01:00 |
flash
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
gatk4
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
gffread
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Fixing a bunch of module tests (#370)
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2021-03-24 17:36:29 +00:00 |
graphmap2
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add graphmap index and align modules (from nanoseq modules) (#468)
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2021-04-30 13:18:58 +01:00 |
gubbins
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Update gubbins module to use new files (#417)
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2021-04-09 07:54:11 +01:00 |
gunzip
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
hisat2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
hmmer/hmmalign
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New module to use hmmalign from HMMER to align sequences (#470)
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2021-04-28 11:21:24 +01:00 |
homer/annotatepeaks
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
iqtree
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add new iqtree module (#427)
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2021-04-12 09:45:56 +01:00 |
ivar
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
kallisto/index
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
kallistobustools
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Added kallistobustools/count (#409)
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2021-04-30 07:27:17 +02:00 |
kraken2/run
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Add kraken2 pigz multi-tool container for compressing output fastq files (#434)
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2021-04-12 18:47:34 +02:00 |
last/lastdb
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New last/lastdb module to index sequences before alignment. (#476)
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2021-05-02 11:36:31 +01:00 |
mash/sketch
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🏋️♀️ new submodule mash/sketch🕺 (#426)
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2021-04-10 16:24:23 +01:00 |
methyldackel
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
minia
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Fixing a bunch of module tests (#370)
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2021-03-24 17:36:29 +00:00 |
minimap2
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
mosdepth
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
msisensor
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Update and check tests are running for all modules (#420)
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2021-04-09 13:47:05 +01:00 |
multiqc
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Fix some module test after adapting test config approach (#379)
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2021-03-24 18:29:41 +00:00 |
nanoplot
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Nanoplot and sequencing_summary.txt for Nanopore test data (#364)
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2021-04-09 08:31:38 +01:00 |
optitype
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update tests for new config (#384)
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2021-04-01 20:22:06 +01:00 |
pangolin
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Version bumps and minor module updates (#406)
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2021-04-06 13:38:41 +01:00 |
picard
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
plasmidid
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Bump plasmidid version (#460)
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2021-04-26 12:40:38 +02:00 |
preseq/lcextrap
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
prodigal
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
prokka
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Update test data paths. (#375)
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2021-03-24 18:18:01 +00:00 |
pycoqc
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Add pycoqc module (#424)
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2021-04-12 10:52:14 +01:00 |
qcat
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Fixes for nanoseq modules (#479)
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2021-04-30 15:57:43 +01:00 |
qualimap/bamqc
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
quast
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
rapidnj
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add rapidnj module (#421)
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2021-04-09 13:04:54 +01:00 |
rasusa
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🧸 Updated rasusa (#437)
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2021-04-12 21:47:55 +01:00 |
raxmlng
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Raxmlng (#474)
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2021-04-29 08:20:05 +01:00 |
rseqc
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Finish rseqc modules (#439)
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2021-04-13 08:49:32 +01:00 |
salmon
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
samtools
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
seacr/callpeak
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
seqkit/split2
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
sequenzautils
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Update and check tests are running for all modules (#420)
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2021-04-09 13:47:05 +01:00 |
seqwish/induce
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
shovill
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
snpsites
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New Snpsites module (#416)
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2021-04-09 08:00:33 +01:00 |
spades
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
star
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Update modules required for rnaseq pipeline (#449)
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2021-04-16 08:56:47 +01:00 |
strelka/germline
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Lint modules ci (#389)
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2021-04-08 09:10:52 +01:00 |
stringtie
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Add stringtie merge module (from nanoseq modules) (#475)
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2021-05-03 07:18:51 +02:00 |
subread/featurecounts
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
tabix
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
tiddit/sv
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
trimgalore
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Fix a bunch of failing tests after switching to test config (#378)
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2021-03-24 18:28:54 +00:00 |
ucsc
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Add ucsc/bedclip module (#450)
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2021-04-15 22:04:59 +02:00 |
unicycler
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
untar
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Fix some module tests after switching to config data (#386)
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2021-03-24 18:28:07 +00:00 |
vcftools
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |
yara
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remove deprecated test tags (#440)
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2021-04-13 18:03:09 +01:00 |