.. |
abacas
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
abricate
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
adapterremoval
|
Refactor adapterremoval (#1491)
|
2022-04-04 21:40:35 +02:00 |
adapterremovalfixprefix
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
agrvate
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
allelecounter
|
fix incorrect yaml formatting. (#1264)
|
2022-04-14 13:35:01 +02:00 |
ampir
|
Apply suggestions from code review
|
2022-06-10 14:46:58 +02:00 |
amplify/predict
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
amps
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
amrfinderplus
|
Amrfinderplus add tool and db version as output (#1912)
|
2022-07-20 11:55:44 +02:00 |
antismash
|
antismashlite: Support GBK input (#1840)
|
2022-07-01 09:29:53 +02:00 |
ariba
|
add module for ariba (#1731)
|
2022-06-15 10:18:31 -06:00 |
arriba
|
Update Arriba to 2.3.0 (#1827)
|
2022-06-29 14:39:13 +02:00 |
artic
|
Add manual version definition for artic modules (#1867)
|
2022-07-12 11:33:51 +01:00 |
ascat
|
Added output files to ASCAT (#1820)
|
2022-06-28 14:45:57 +02:00 |
assemblyscan
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ataqv
|
Ataqv mkarv (#1857)
|
2022-07-07 22:40:31 +02:00 |
atlas
|
New Module: atlas/recal (#1915)
|
2022-07-22 15:36:53 +02:00 |
bakta
|
update bakta to latest version (v1.4.0) (#1428)
|
2022-03-24 10:49:17 -06:00 |
bamaligncleaner
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
bamcmp
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
bamtools
|
Remove a blank line (#1793)
|
2022-06-17 10:58:24 +01:00 |
bamutil/trimbam
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
bandage/image
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
bbmap
|
Improve descriptions for modules with missing
|
2022-07-06 12:03:08 +02:00 |
bcftools
|
update for bcftools merge (#1908)
|
2022-07-20 11:22:51 +02:00 |
bcl2fastq
|
Module/bcl2fastq (#1883)
|
2022-07-14 13:18:21 +02:00 |
bclconvert
|
bclconvert: Update Dockerfile (#1819)
|
2022-06-28 11:11:16 +01:00 |
bedtools
|
added bedtools split
|
2022-05-17 14:24:32 +02:00 |
biobambam
|
bamsormadup: add extra test case, fix single file input (#1905)
|
2022-07-19 13:52:37 +02:00 |
biscuit
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
bismark
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
blast
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
bowtie
|
Improve descriptions for modules with missing
|
2022-07-06 12:03:08 +02:00 |
bowtie2
|
Improve descriptions for modules with missing
|
2022-07-06 12:03:08 +02:00 |
bracken/bracken
|
Add bracken (#1423)
|
2022-03-22 16:40:21 +01:00 |
busco
|
Update meta.yml
|
2022-05-06 11:56:43 +00:00 |
bwa
|
feat: remove read_group which should be set up with task.ext.args (#1521)
|
2022-04-13 14:30:34 +02:00 |
bwamem2
|
feat: remove read_group which should be set up with task.ext.args (#1521)
|
2022-04-13 14:30:34 +02:00 |
bwameth
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
cat
|
Replace vanilla Linux Biocontainer with Ubuntu (#1557)
|
2022-04-22 14:50:07 +01:00 |
cellranger
|
Bugfix for CellRanger Dockerfile (#1812)
|
2022-06-27 11:07:33 +02:00 |
centrifuge
|
Add centrifuge_kreport module (#1514)
|
2022-04-13 15:33:51 +02:00 |
checkm/lineagewf
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
chromap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
clonalframeml
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
cmseq/polymut
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
cnvkit
|
added fasta_fai as input + changed if statements
|
2022-06-02 12:57:50 +02:00 |
cnvpytor
|
removed extra ) in the version strings (#1850)
|
2022-07-05 15:24:08 +02:00 |
controlfreec
|
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)
|
2022-04-08 11:43:40 +02:00 |
cooler
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
csvtk
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
custom
|
update multiqc and strelka modules version to have the same as the other modules using these ones (#1914)
|
2022-07-21 11:44:07 +02:00 |
cutadapt
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
damageprofiler
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
dastool
|
DASTool output channels update (#1489)
|
2022-04-04 13:31:36 +02:00 |
dedup
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
deeparg
|
Deeparg singularity container fix 2 (#1406)
|
2022-03-18 16:21:55 +01:00 |
deeptools
|
changed container + add cram2bam conversion
|
2022-06-02 10:38:05 +02:00 |
deepvariant
|
Revert recent changes made to some of the modules (#1463)
|
2022-03-30 20:21:06 +02:00 |
delly/call
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
diamond
|
Update DIAMOND module to output log file (#1879)
|
2022-07-14 16:18:28 +02:00 |
dragmap
|
feat: remove read_group which should be set up with task.ext.args (#1521)
|
2022-04-13 14:30:34 +02:00 |
dragonflye
|
Update dragonflye to latest version (#1442)
|
2022-03-24 14:56:32 -04:00 |
dshbio
|
Update dsh-bio to version 2.0.8. (#1483)
|
2022-04-09 11:13:47 -05:00 |
ectyper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
elprep
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
emmtyper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ensemblvep
|
update ensemblvep to 106.1 and cache to 106 (#1876)
|
2022-07-13 13:43:03 +02:00 |
entrezdirect/esummary
|
Add ENTREZDIRECT/ESUMMARY (#1833)
|
2022-07-13 11:26:58 -06:00 |
expansionhunter
|
Improve descriptions for modules with missing
|
2022-07-06 12:03:08 +02:00 |
faqcs
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
fargene
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
fastani
|
Improve descriptions for modules with missing
|
2022-07-06 12:03:08 +02:00 |
fastk
|
Add FastK/Merge (#1828)
|
2022-06-29 18:04:36 +02:00 |
fastp
|
module FASTP: Support for interleaved FASTQ (#1891)
|
2022-07-19 16:27:15 +01:00 |
fastqc
|
add stub to modules used in raredisease pipeline (#1206)
|
2022-03-28 17:48:39 +02:00 |
fastqscan
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
fasttree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ffq
|
Add ffq module (#1842)
|
2022-07-01 08:59:13 +02:00 |
fgbio
|
Fgbio tmpdir modification (#1890)
|
2022-07-15 11:20:58 +02:00 |
filtlong
|
Update filtlong module to output log file (#1873)
|
2022-07-12 17:05:31 +02:00 |
flash
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
flye
|
Add new module: Flye (#1164)
|
2022-06-30 22:45:55 +02:00 |
freebayes
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
gamma/gamma
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
gatk
|
Apply suggestions from code review
|
2022-06-09 08:33:37 +02:00 |
gatk4
|
Variant recalibration (#1885)
|
2022-07-15 09:21:34 +02:00 |
gecco/run
|
Add gecco/run module (#1790)
|
2022-06-22 13:43:45 +02:00 |
genescopefk
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
genmap
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
genomescope2
|
Update outputs and test data set
|
2022-05-11 10:42:17 +00:00 |
genrich
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
gffread
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
glnexus
|
add stub to modules used in raredisease pipeline (#1206)
|
2022-03-28 17:48:39 +02:00 |
graphmap2
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
gstama
|
Adjust requested ressources for gstama/merge , isoseq3/refine , lima , ultra/align (#1858)
|
2022-07-07 11:10:18 +01:00 |
gtdbtk/classifywf
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
gubbins
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
gunc
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
gunzip
|
Add stub run to gunzip module (#1849)
|
2022-07-04 17:33:55 +02:00 |
gvcftools/extractvariants
|
added gvcftools/extractvariants (#1924)
|
2022-07-25 13:30:35 +02:00 |
hamronization
|
add module hamronization/amrfinderplus (#1888)
|
2022-07-15 10:54:42 +02:00 |
haplocheck
|
fix: stub output name
|
2022-06-08 10:10:24 -03:00 |
happy
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
hicap
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
hifiasm
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
hisat2
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
hmmcopy
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
hmmer
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
hmtnote
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
homer
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
hpsuissero
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
ichorcna
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
idr
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
imputeme/vcftoprs
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
instrain/profile
|
Instrain profile (#1822)
|
2022-06-30 18:44:41 +02:00 |
iqtree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ismapper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
isoseq3
|
Adjust requested ressources for gstama/merge , isoseq3/refine , lima , ultra/align (#1858)
|
2022-07-07 11:10:18 +01:00 |
ivar
|
Patch fix artic/minion and ivar/variants modules (#1326)
|
2022-02-18 17:36:09 +00:00 |
jupyternotebook
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
kaiju
|
Add KAIJU2KRONA module (#1800)
|
2022-06-23 16:38:50 +00:00 |
kallisto/index
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
kallistobustools
|
Improved kbtools/count (#1884)
|
2022-07-14 14:27:56 +02:00 |
kat/hist
|
Add module kat hist
|
2022-05-06 07:54:10 +00:00 |
khmer
|
Add khmer unique-kmers.py module (#1838)
|
2022-06-30 16:23:30 +01:00 |
kleborate
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
kraken2/kraken2
|
update to kraken2: breaking change - output channels renamed (#1525)
|
2022-04-21 14:33:59 +02:00 |
krakentools/kreport2krona
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
krona
|
Fix Krona ktimporttaxonomy to allow multiple input files and simplifies database input (#1841)
|
2022-07-01 15:18:29 +02:00 |
last
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
leehom
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
legsta
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
lima
|
Adjust requested ressources for gstama/merge , isoseq3/refine , lima , ultra/align (#1858)
|
2022-07-07 11:10:18 +01:00 |
lissero
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
lofreq
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
macrel/contigs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
macs2/callpeak
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
mafft
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
malt
|
Update MALT to older version due to major bug in most recent version (#1796)
|
2022-06-20 08:20:22 +02:00 |
maltextract
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
manta
|
Update modules/manta/convertinversion/main.nf
|
2022-06-13 09:26:29 +02:00 |
mapdamage2
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
mash
|
Patch mash screen
|
2022-05-25 12:29:14 +00:00 |
mashtree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
maxbin2
|
Fix for Maxbin2 emitting input files (#1376)
|
2022-03-08 15:56:23 +01:00 |
maxquant/lfq
|
ran prettier
|
2022-05-16 14:30:40 +02:00 |
mcroni
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
md5sum
|
fix software definitions
|
2022-05-06 11:07:05 +02:00 |
medaka
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
megahit
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
megan
|
Add MEGAN/DAA2INFO (#1848)
|
2022-07-05 09:36:22 +02:00 |
meningotype
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
merqury
|
Add Merqury (#1647)
|
2022-07-14 10:38:50 +02:00 |
merquryfk
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
meryl
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:16:08 +02:00 |
metabat2
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
metaphlan3
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
methyldackel
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
minia
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
miniasm
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
minimap2
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
mlst
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
mobsuite/recon
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
mosdepth
|
Update main.nf
|
2022-05-25 19:42:15 +01:00 |
motus
|
Update MOTUS/PROFILE module to output log file (#1871)
|
2022-07-13 11:26:27 +02:00 |
msisensor
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
msisensorpro
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
mtnucratio
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
multiqc
|
Fix MultiQC conda (#1856)
|
2022-07-06 10:16:34 +02:00 |
multivcfanalyzer
|
Add MultiVCFAnalyzer (#1845)
|
2022-07-05 09:47:10 +02:00 |
mummer
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
muscle
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
nanolyse
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
nanoplot
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
ncbigenomedownload
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
nextclade
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
ngmaster
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
ngscheckmate/ncm
|
NGSCheckMate doesn't generate a pdf for only one sample, made optional output (#1839)
|
2022-06-30 17:43:34 +01:00 |
nucmer
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
optitype
|
Add BAM indexes as input for optitype module. (#1388)
|
2022-03-15 17:02:40 +01:00 |
pairix
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
pairtools
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
panaroo/run
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
pangolin
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
paraclu
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
pbbam/pbmerge
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
pbccs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
pear
|
Add new module: Pear (#1779)
|
2022-07-15 10:28:31 +02:00 |
peddy
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
phantompeakqualtools
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
phyloflash
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
picard
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
pirate
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
plasmidfinder
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
plasmidid
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
plink
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
plink2
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
pmdtools/filter
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
porechop
|
Update PORECHOP module to output log file (#1870)
|
2022-07-12 16:07:31 +02:00 |
preseq
|
Split preseq lcextrap and ccurve (#1440)
|
2022-03-25 17:11:40 +00:00 |
prinseqplusplus
|
Add PRINSEQPLUSPLUS (#1481)
|
2022-04-03 16:06:22 +02:00 |
prodigal
|
fix yml formatting (#1263)
|
2022-02-07 18:16:43 +01:00 |
prokka
|
Prokka: Fix typo in variable name (#1846)
|
2022-07-04 15:04:59 +02:00 |
pycoqc
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
pydamage
|
Update PyDamage module (#1467)
|
2022-03-31 09:18:18 -04:00 |
qcat
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
qualimap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
quast
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
racon
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
rapidnj
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
rasusa
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
raven
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
raxmlng
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
rgi/main
|
RGI/main export versions as explicit emission strings (#1909)
|
2022-07-20 10:33:53 +02:00 |
rhocall/annotate
|
fix versions.yaml
|
2022-06-07 14:43:35 +02:00 |
rmarkdownnotebook
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
roary
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
rsem
|
Bump STAR version to 2.7.10a for RSEM modules (#1573)
|
2022-04-27 19:21:26 +01:00 |
rseqc
|
Change label for rseqc/tin to process_high (#1327)
|
2022-02-21 13:26:51 +00:00 |
rtgtools
|
new module rtgtools/pedfilter (#1777)
|
2022-06-14 16:02:18 +02:00 |
salmon
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
samblaster
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
samtools
|
small update to samtools/merge (#1896)
|
2022-07-18 11:37:45 +02:00 |
scoary
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
seacr/callpeak
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
seqkit
|
feat: add module for seqkit stats (#1466)
|
2022-03-30 23:01:17 +02:00 |
seqsero2
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
seqtk
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
sequenzautils
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
seqwish/induce
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
sexdeterrmine
|
Apply suggestions from code review
|
2022-06-10 11:03:01 +02:00 |
shasum
|
fix software definitions
|
2022-05-06 11:07:05 +02:00 |
shigatyper
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
shovill
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
sistr
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
slimfastq
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
snapaligner
|
snapaligner: improve index detection (#1836)
|
2022-06-30 12:19:46 +02:00 |
snippy/run
|
Update main.nf
|
2022-06-03 13:05:43 -06:00 |
snpdists
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
snpeff
|
DRAFT: Extend output from snpeff (#1895)
|
2022-07-16 20:08:52 +02:00 |
snpsift/split
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
snpsites
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
sortmerna
|
Add when: block (#1261)
|
2022-02-04 09:53:32 +01:00 |
sourmash/sketch
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
spades
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
spatyper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
sratools
|
refactor: move files to custom section
|
2022-05-11 17:33:45 +02:00 |
srst2/srst2
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
ssuissero
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
stadeniolib/scramble
|
new tool: staden_io_lib (#1499)
|
2022-04-08 09:54:15 -04:00 |
staphopiasccmec
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
star
|
Bump container version for STAR to 2.7.10a
|
2022-05-27 11:35:04 +01:00 |
stranger
|
add stubs for stranger (#1543)
|
2022-04-22 10:10:43 +02:00 |
strelka
|
update multiqc and strelka modules version to have the same as the other modules using these ones (#1914)
|
2022-07-21 11:44:07 +02:00 |
stringtie
|
Rename process from STRINGTIE to STRINGTIE_STRINGTIE (#1546)
|
2022-04-22 15:13:06 +01:00 |
subread/featurecounts
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
svdb
|
SVDB MERGE samtools version (#1913)
|
2022-07-20 12:42:40 +02:00 |
tabix
|
fix bgziptabix extension (#1784)
|
2022-06-15 10:33:10 +02:00 |
tailfindr
|
Tailfindr (#1904)
|
2022-07-22 16:20:53 +02:00 |
tbprofiler/profile
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
tiddit
|
TIDDIT - add --skip_assembly when no bwa specified (#1769)
|
2022-06-13 17:02:59 +02:00 |
transdecoder
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
trimgalore
|
Add Trimgalore output for unpaired reads (#1568)
|
2022-04-26 19:15:24 +01:00 |
trimmomatic
|
Trimmomatic (#1757)
|
2022-06-17 13:18:15 +00:00 |
ucsc
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
ultra
|
Adjust requested ressources for gstama/merge , isoseq3/refine , lima , ultra/align (#1858)
|
2022-07-07 11:10:18 +01:00 |
umitools
|
Set randomseed for UMI tools if not otherwise set (#1837)
|
2022-06-30 16:30:38 +01:00 |
unicycler
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
untar
|
fix untar output dir
|
2022-06-02 11:09:55 +02:00 |
unzip
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
vardictjava
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
variantbam
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
vcf2db
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
vcf2maf
|
Update manual versioning (#1813)
|
2022-06-27 10:35:41 +02:00 |
vcfanno
|
small changes to vcfanno (#1804)
|
2022-06-24 08:58:26 +02:00 |
vcflib/vcfuniq
|
Bump tool versions for modules required in viralrecon (#1859)
|
2022-07-07 14:48:04 +01:00 |
vcftools
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
vsearch/usearchglobal
|
Merge branch 'vsearch_usearch_global' of https://github.com/jtangrot/nf-core_modules into vsearch_usearch_global
|
2022-05-30 13:05:00 +02:00 |
yara
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |