mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
8d9e8ae839
* add racon * add medaka module * add medaka module * add medaka module * add medaka module * add medaka module * add medaka module * Indentation * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update main.nf * Update main.nf * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
472 B
Text
16 lines
472 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MEDAKA } from '../../../modules/medaka/main.nf' addParams( options: [suffix:'.polished.genome'] )
|
|
|
|
workflow test_medaka {
|
|
|
|
input = [
|
|
[ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
MEDAKA ( input )
|
|
}
|