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nf-core_modules/modules/samtools
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Benedetto Polimeni d5d785b3d8
[samtools] add optional csi output (#2064) 
* [samtools] add optional csi output, when applicable

* Remove empty line

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-20 21:08:29 +01:00
..
ampliconclip Improve descriptions for modules with missing 2022-07-06 12:03:08 +02:00
bam2fq Test --no-name to solve inconsistent checksums 2022-05-03 15:18:09 +02:00
collatefastq Add samtools/collatefastq module (#1536) 2022-04-20 10:05:17 +02:00
convert Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
depth Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
dict Added the samtools/dict module (#1922) 2022-07-26 22:13:19 +01:00
faidx Added the optional .gzi output of "samtools faidx" (#1935) 2022-09-08 13:35:23 +01:00
fastq Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
fixmate Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
flagstat Fix/samtools flagstat (#1979) 2022-08-29 13:11:58 +02:00
idxstats samtools/*stats*: use prefix for outputs (#1788) 2022-06-16 13:42:01 +02:00
index Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
merge [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00
mpileup Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
sort [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00
stats fix samtools stats thread usage (#1975) 2022-08-29 12:05:47 +02:00
view [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00