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< a href = /websites/ > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 512 512" > < path d = "M0 32H512V480H0V32zm160 72v48H448V104H160zm-32-8H64v64h64V96z" / > < / svg > < / span > Websites< / a > < / nav > < / aside > < main > < style > . motto :: before { background-image : url ( /images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_6000x2000_fill_q75_box_center.jpg ) } < / style > < div class = motto title > < div class = motto-inside > < h1 id = motto > James A. Fellows Yate< / h1 > < / div > < / div > < section > < div > < / div > < div class = card > < a class = category-button href = /categories/paper/ title = Paper > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M96 0C43 0 0 43 0 96V416c0 53 43 96 96 96H384h32 32V448H416V384h32V0H416 384 96zm0 384H352v64H96c-17.7.0-32-14.3-32-32s14.3-32 32-32zm32-256H352v32H128V128zm224 64v32H128V192H352z" / > < / svg > < / span > < / a > < div class = card-body > < div class = card-title > < a href = https://doi.org/10.1101/2023.10.20.563221 > < h3 > nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling< / h3 > < / a > < / div > < div > 23 Oct 2023< / div > < a href = /people/sofia-stamouli/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Sofia Stamouli< / a >
< a href = /people/moritz-e.-beber/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Moritz E. Beber< / a >
< a href = /people/tanja-normark/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Tanja Normark< / a >
< a href = /people/thomas-a.-christensen-ii/ class = "card-link
bolder">< span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Thomas A. Christensen II< / a >
< a href = /people/lili-andersson-li/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Lili Andersson-Li< / a >
< a href = /people/maxime-borry/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Maxime Borry< / a >
< a href = /people/mahwash-jamy/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Mahwash Jamy< / a >
< a href = /people/nf-core-community/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > nf-core community< / a >
< a href = /people/james-a.-fellows-yate/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > James A. Fellows Yate< / a > < p class = card-text > Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
< strong > < small > < a href = https://doi.org/10.1101/2023.10.20.563221 > Read more » < / a > < / small > < / strong > < / p > < div class = card-footer > < a href = /tags/genomics/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > genomics< / a > < / div > < / div > < / div > < / section > < / main > < / div > < footer > < img src = /graphics/brandedbull.min.svg height = 95rem > < p > © 2023 Thomas A. Christensen II< br > Licensed
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