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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>James A. Fellows Yate - MillironX</title><link href="/styles/millironx.min.css" rel=stylesheet></head><body><header><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object><h1 class=font-small-caps>Milliron X</h1></header><div class=row><aside><nav><a href=/><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 576 512"><path d="M511.8 287.6H576V240L288.4.0.0 240v47.6H64.1V512H224V352H352V512H512.8l-1-224.4z"/></svg></span>Home</a>
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<a href=/websites/><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path d="M0 32H512V480H0V32zm160 72v48H448V104H160zm-32-8H64v64h64V96z"/></svg></span>Websites</a></nav></aside><main><style>.motto::before{background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_6000x2000_fill_q75_box_center.jpg)}</style><div class=motto title><div class=motto-inside><h1 id=motto>James A. Fellows Yate</h1></div></div><section><div></div><div class=card><a class=category-button href=/categories/paper/ title=Paper><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M96 0C43 0 0 43 0 96V416c0 53 43 96 96 96H384h32 32V448H416V384h32V0H416 384 96zm0 384H352v64H96c-17.7.0-32-14.3-32-32s14.3-32 32-32zm32-256H352v32H128V128zm224 64v32H128V192H352z"/></svg></span></a><div class=card-body><div class=card-title><a href=https://doi.org/10.1101/2023.10.20.563221><h3>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a></div><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Moritz E. Beber</a>
<a href=/people/tanja-normark/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="card-link
bolder"><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Maxime Borry</a>
<a href=/people/mahwash-jamy/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>Mahwash Jamy</a>
<a href=/people/nf-core-community/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class=card-link><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z"/></svg></span>James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more&nbsp;&#187;</a></small></strong></p><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><span class="fa-container fa-fw"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z"/></svg></span>genomics</a></div></div></div></section></main></div><footer><img src=/graphics/brandedbull.min.svg height=95rem><p>&copy; 2023 Thomas A. Christensen II<br>Licensed
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>CC-BY 4.0</a><br>Built with <a href=https://gohugo.io>Hugo</a> v0.111.3</p></footer><script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script></body></html>
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