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113 commits

Author SHA1 Message Date
58119f5968
feat: Add character-dialog shortcode and stylesheet
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2025-11-11 23:34:40 -06:00
3cc62444fc
feat: Add article element for blog-specific page rendering 2025-11-11 23:34:40 -06:00
a37436de6a
fead: add character individual poses 2025-11-11 23:34:40 -06:00
6ac6f9b9d7
feat: add character ref sheets and description 2025-11-11 23:34:39 -06:00
506d1e8d69
feat: Add LLM babbler link where only robots can find it
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2025-10-31 16:18:52 -05:00
2fe579bcc7
feat: Make page occupy middle of screen
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2025-10-20 09:36:04 -05:00
a85c956e12
perf: Add contain directive to scrolling header 2025-10-20 08:01:46 -05:00
f08b173cc4
feat: Add hCaptcha to contact form
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2025-09-29 09:35:13 -05:00
9f50de4396
refactor: Rename honeypot field to honorific
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There has been a massive uptick in spam within the past two weeks. A
form field called `_gotcha` is a little on-the-nose, so as a first pass
effort, rename the field to something that sounds more legitimate for a
contact form. More involved strategies will be put in place, but this is
a quick and dirty fix that is worth a try based on the time involved.
2025-09-29 09:27:55 -05:00
5b976f9029
fix: Item listing validation errors
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2025-04-05 11:32:20 -05:00
950765d336
fix: Update new errors on indieweb validator
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2025-04-05 11:29:03 -05:00
559bb62310
fix: Make single academia indieweb
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2025-04-05 11:08:47 -05:00
4ac4b8f495
fix: h-card now includes p-note
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2025-04-05 10:48:07 -05:00
53ef18921f
fix: Convert webp images to jpeg
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ci/woodpecker/push/woodpecker Pipeline was successful
Apparently running the docker image on my local Macbook
can handle webp, but the remote builder can't. I'm running
the exact same woodpecker ci pipeline in both cases, so
maybe it's the difference between the amd64 and arm64
images? In any case, it's not worth keeping around two webp
images, so convert them to jpeg.
2025-04-05 00:27:51 -05:00
c38323c665
fix: Show abbr on tap for mobile
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2025-03-30 18:47:53 -05:00
77bc19371c
cleanup: Simplify category button code
This is in prep for a similar feature in BibTex citations
2025-03-30 18:47:52 -05:00
266348b302
feat: Add modern web favicons 2025-03-05 10:03:29 -06:00
249e5af628
feat: Add Twitter cards 2025-03-05 10:03:29 -06:00
ae4cbd1575
feat: Add microdata schema 2025-03-05 10:03:29 -06:00
4df3c185c6
feat: Add OpenGraph to pages 2025-03-05 10:03:29 -06:00
fba5c6fa3d
feat: Add RSS subscribe links 2025-03-05 10:03:29 -06:00
11ce31ff25
fix: correct missing word in bio 2025-03-05 10:03:28 -06:00
23f96f6ce0
fix: Add author for Ag Olympics reel
Fixes Atom feed validation error
2025-03-05 10:03:28 -06:00
fc96b7b3a8
feat: Add Atom feeds 2025-03-05 10:03:28 -06:00
763d58e379
style: Fix titles 2025-03-05 10:03:28 -06:00
9f9e96efd9
feat: Add custom blockquote hook 2025-03-05 10:03:28 -06:00
3b6748b59d
style: Shrink images that are in entries without dates
Otherwise there is too much whitespace
2025-03-05 10:03:28 -06:00
100f771f36
feat: Remove dates from entries that don't list them 2025-03-05 10:03:27 -06:00
2867ae44a7
refactor: Move blogroll to files like every other section 2025-03-05 10:03:27 -06:00
785aa22fbe
refactor: Move bio stuff around 2025-03-05 10:03:27 -06:00
d0ea34b38c
feat: Add chemical engineering cow as blog cover image 2025-03-05 10:03:26 -06:00
ed2cb6b71b
refactor: Use Permalink instead of RelPermalink
This allows for staging on Codeberg Pages
2025-02-25 10:03:16 -06:00
b2144788bc
refactor: Revise my bio 2025-02-25 10:01:47 -06:00
a8c42b3b96
style: Adjust spacing 2025-02-24 13:44:53 -06:00
80e48c4e42
fix: Bold my name on all devices 2025-02-24 13:36:20 -06:00
9d99603872
feat: Add microformat2 microdata for item lists 2025-01-31 10:43:02 -06:00
74c807a59c
feat: Add microformat2 markup for personal data 2025-01-31 10:43:02 -06:00
61ff3a1027
feat: Add rel=author to author listings 2025-01-31 10:43:02 -06:00
ddb1d6f0cb
fix: Only use rel=me on pages that are actually about me 2025-01-31 10:43:02 -06:00
2c4172fed6
refactor: Make scrolling image header use flexbox
After a bunch of mucking around, use flexbox as
directly as possible to make scrolling animation
the most consistent.
2025-01-31 10:43:02 -06:00
60747cf3ca
fix: Footer when using Chrome scrolling header 2025-01-31 10:43:02 -06:00
af7269d3e3
refactor: Remove relative positioning from cards 2025-01-31 10:43:02 -06:00
54d4113f16
style: Add padding around scrolling header text 2025-01-31 10:43:02 -06:00
8d3be08794
style: Fix Chrome scrolling header 2025-01-31 10:43:01 -06:00
91f11edae1
feat: Add Lightning crypto address 2025-01-31 10:43:01 -06:00
4e06ea3f95
build: Add weekly builds to check content adapters 2025-01-31 10:43:01 -06:00
25d488ee23
style: Only show blub on first page of lists 2025-01-31 10:43:01 -06:00
4969101fff
feat: Show not just featured pages on home 2025-01-31 10:43:01 -06:00
af1a17e760
refactor: Only show code projects that have been tagged
I don't want my dotfiles or webpage updates constantly
hogging the front page just because they get constant
commits. Switch to using tag dates to highlight when
projects have reached a significant milestone.
2025-01-31 10:43:01 -06:00
b2e5839d34
feat: Add category labels to titles 2025-01-31 10:43:01 -06:00
2f8d7d3080
feat: Add pages with internal link back into sitemap 2025-01-31 10:43:01 -06:00
c3f96dcc9b
feat: Exclude pages that have external link 2025-01-31 10:43:00 -06:00
cd512920da
refactor: Make Ag Olympics Reel link out 2025-01-31 10:43:00 -06:00
e6de2f26ef
feat: Restore Ag Olympics Reel 2025-01-31 10:43:00 -06:00
a146103847
style: Make tags show up in lowercase 2025-01-31 10:43:00 -06:00
3e05184b08
feat: Add tags to code repos 2025-01-31 10:43:00 -06:00
7bf8f6b036
build: Add SourceGit support for commit hooks 2025-01-31 10:43:00 -06:00
2b18eb61d9
cleanup: Add Prettier formatting for gotemplates 2025-01-31 10:43:00 -06:00
8ce938b544
style: Make footer always at bottom 2025-01-31 10:43:00 -06:00
1e620bd63e
feat: Add tags support to video adapter 2025-01-31 10:43:00 -06:00
f08fc89ddc
feat: Add crypto addresses 2025-01-31 10:42:59 -06:00
30f784ed3a
feat: Add GPG key 2025-01-31 10:42:59 -06:00
b2576f1047
cleanup: Remove more accounts that I don't think are important 2025-01-31 10:42:59 -06:00
585ffb5f0d
style: Add border and header around account list 2025-01-31 10:42:59 -06:00
841e42f91a
fix: Use relative units to prevent pagination overflow 2025-01-31 10:42:59 -06:00
5b4b3d9135
fix: Use build date for copyright notice 2025-01-31 10:42:59 -06:00
2af8e8e14f
style: Add padding to make dates look more comfortable 2025-01-31 10:42:59 -06:00
4c7e059c5c
refactor: Use truncate for summaries instead of summary 2025-01-31 10:42:59 -06:00
45d51e63cc
feat: Add people link parsing to video content adapter 2025-01-31 10:42:59 -06:00
2cff4ed16b
feat: Upgrade to Hugo v0.141.0
This update includes the ability to insert QR codes natively. To
complete the upgrade:

- Update flake.nix and flake.lock to the commit of nixpkgs that
  contains Hugo v0.141.0
- Update .woodpecker.yml to pull the Hugo v0.141.0 image
- Update content adapters to use the new error handling
  implemented in v0.141.0
2025-01-31 10:42:58 -06:00
43d69981d4
fix: Fix James Yates name 2025-01-31 10:42:58 -06:00
a2b07c3637
feat: Add Llama3-generated blog posts 2025-01-31 10:42:58 -06:00
d38836e6fd
cleanup: Remove accounts that aren't publicly viewable 2025-01-31 10:42:58 -06:00
e17e6ac867
feat: Add academia thumbnails 2025-01-31 10:42:58 -06:00
2c90c42831
ci: Switch to hugomods docker image
Using external web resources means that nix build will fail. Switch to using the hugomods image instead.
2025-01-31 10:42:58 -06:00
2222716ae1
feat: Add featured content filtering for external data adapters 2025-01-31 10:42:58 -06:00
0bb9bac286
feat: Enable pagination for all lists 2025-01-31 10:42:58 -06:00
ac5d4259e2
feat: Add icon to represent code projects 2025-01-31 10:42:58 -06:00
37427ba982
feat: Add content adapter for code projects 2025-01-31 10:42:57 -06:00
f9606b8e35
feat: Add content adapter for videos 2025-01-31 10:42:57 -06:00
8b83950d85
feat: Show all content on home page 2025-01-31 10:42:57 -06:00
a6dcb45fda
cleanup: Add properties to make all branch pages consistent 2025-01-31 10:42:57 -06:00
07af4c1874
fix: Only render scrolling header space on pages that have scrolling header 2025-01-31 10:42:57 -06:00
8a963afc99
feat: Add rel=me support for about menu link 2025-01-31 10:42:57 -06:00
0cf8b90206
refactor: Move about me stuff from home page to about page 2025-01-31 10:42:57 -06:00
060a6129bd
feat: Complete about people page 2025-01-31 10:42:56 -06:00
b781369485
fix: Rename people/list.html to people/term.html
This is really the layout for the list of works on each person's page,
so switch to the more specific lookup name.
2025-01-31 10:42:56 -06:00
7d50529ad1
refactor: move list card to partial template 2025-01-31 10:42:56 -06:00
9ff5002517
editor: Use Prettier for formatting within Zed 2025-01-31 10:42:56 -06:00
101ae735a2
feat: Add Accounts bar 2025-01-31 10:42:56 -06:00
67bec1e8dd
style: Remove Bootstrap container from main content 2025-01-31 10:42:56 -06:00
a2c32f3c0d
feat: Scaffold initial about me page 2025-01-31 10:42:56 -06:00
4bffdc255e
feat: Add Blog landing page 2025-01-31 10:42:56 -06:00
b4b0c16601
feat: Add Rickrolling login button 2025-01-31 10:42:56 -06:00
28a445915a
feat: Add code menu button 2025-01-31 10:42:55 -06:00
fac68cbec0
feat!: Remove website listing 2025-01-31 10:42:55 -06:00
7973e63ca0
refactor: Redirect videos to external PeerTube ref 2025-01-31 10:42:55 -06:00
c0716d277f
feat: Allow menu items to declare custom URLs 2025-01-31 10:42:55 -06:00
6709b3566f
chore: Add MacOS to gitignore 2025-01-31 10:42:40 -06:00
a26a5346a2
feat: hijack link titles for use as RelMeAuth
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2025-01-29 23:26:00 -06:00
fd079a94dc
feat: Add BPV poster
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2025-01-26 18:22:33 -06:00
b207026cee
feat: Add NAAB/Medgene sponsored talk 2025-01-26 18:17:29 -06:00
c2b05d8f48
feat: Add YAVSAP Phi-Zeta day presentation 2025-01-26 18:04:48 -06:00
bdc3650c88
feat: Add subdomain awareness to GoatCounter
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2025-01-22 18:06:37 -06:00
fad7c616a3
perf: reduce resolution of scrolling image header
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2025-01-17 14:09:27 -06:00
726c0cdd3e
feat: Add css debugger to anatomy-quiz
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2025-01-17 13:54:17 -06:00
a01ef89287
chore: Update to latest nixpkgs channel
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2025-01-09 14:16:43 -06:00
2f59e9fc74
chore: Use smaller Nix channel for faster builds 2025-01-09 14:13:56 -06:00
e63d77b931 chore: Remove .prettierignore
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2025-01-09 15:07:25 -05:00
aceb5ba95d cleanup: Remove unused module mounts 2025-01-09 15:07:25 -05:00
aa2c0e665c deps: Remove unused JavaScript dependencies 2025-01-09 15:07:25 -05:00
8da69b5363 refactor: Make phone number masking use vanilla JS 2025-01-09 15:07:25 -05:00
24ae46716b Delete content/posts/new-site.md
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2025-01-08 20:24:58 -05:00
163 changed files with 2819 additions and 1397 deletions

2
.envrc
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@ -1,2 +1,4 @@
use flake
layout node
mkdir -p "${HOME}/Library/Application Support/SourceGit"
echo "${PATH}" > "${HOME}/Library/Application Support/SourceGit/PATH"

28
.gitignore vendored
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@ -161,3 +161,31 @@ fontawesome-pro-6.3.0-web
### Nix Flake gitignore ###
result
### MacOS gitignore ###
# General
.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
# Thumbnails
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk

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@ -1,2 +1 @@
node_modules
themes
layouts/_default/index.manifest.json

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@ -4,3 +4,6 @@ overrides:
- files: "*.html"
options:
parser: "go-template"
- files: "*.gotmpl"
options:
parser: "go-template"

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@ -1,14 +1,15 @@
when:
branch: master
event: push
event:
- push
- cron
cron: "weekly-build"
steps:
- name: Build site
image: nixos/nix:2.24.11
image: hugomods/hugo:std-base-non-root-0.141.0
commands:
- echo 'experimental-features = flakes nix-command' >> /etc/nix/nix.conf
- nix build
- mkdir public && cp -av result/* public
- hugo --minify
- name: Deploy to pages
image: codeberg.org/xfix/plugin-codeberg-pages-deploy:1
settings:

13
.zed/settings.json Normal file
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@ -0,0 +1,13 @@
{
"languages": {
"HTML": {
"formatter": {
"external": {
"command": "prettier",
"arguments": ["--stdin-filepath", "{buffer_path}"]
}
}
}
},
"file_types": { "HTML": ["gotmpl"] }
}

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@ -6,18 +6,20 @@ My personal website. Hosted over at <https://millironx.com>
## Notes to self
All dependencies are now bundled as a Nix Flake. The only trouble with this is
that npm packages don't play well with Nix (and especially Flakes), so npm
packages are specified twice: once in `package{-lock}.json` and then again in
`node*.nix`.
### Nix dev shell
All developer dependencies are now bundled as a Nix Flake. The only trouble with
this is that npm packages don't play well with Nix (and especially Flakes), so
npm packages are specified twice: once in `package{-lock}.json` and then again
in `node*.nix`.
Compounding this, there are formatters and commit hooks that require npm to be
functional. So, to develop right now requires allowing direnv to setup the Nix
development shell, then immediately installing npm packages via `npm ci`. VSCode
(with extensions) and Zed are smart enough to figure out how to use direnv, but
other programs (like SourceGit) not so much, so you'll need to launch those
programs from inside a direnv shell to make sure they have Prettier, Husky, and
all that jazz to execute the hooks.
(with extensions) and Zed are smart enough to figure out how to use direnv, and
direnv will pass the PATH to SourceGit for Mac, but other programs aren't that
smart, so you'll need to launch those programs from inside a direnv shell to
make sure they have Prettier, Husky, and all that jazz to execute the hooks.
Last compounding factors: if `node_modules` is present in the root directory,
then node2nix won't create a correct derivation, so `node_modules` will need to
@ -30,3 +32,11 @@ run.
Yes, hopefully I can get completely away from npm here soon, but this is a minor
inconvenience considering how (not) often I install new packages into this site,
and really discourages me from contributing to the website obesity crisis.
### Nix building
Nix building will not work because Hugo reaches out to the internet via content
adapters, and that (by intention) is not perfectly reproducable. As such,
_development_ tools are installed in a Nix shell, but building has been removed
from the Flake. Thankfully, hugomods provides "canonical" Docker images for hugo
now.

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# Characters
Imaginary friends that help me inject personality into my articles. These are
anthropomorphized versions of animals that I have known in real life. I tried to
draw them roughly in the style of Chris Pasquini, but failed myself, then tried
using Perplexity's image generation. The style isn't quite the same, but I like
it for these animals. Also, Perplexity does a horrible job of labeling images,
so ignore the ref sheet emotion labels.
## Spawn of Satan (aka Spawn aka SOS)
![Spawn ref sheet](spawn/_ref-body-perplexity.png)
Spawn of Satan is the name Travis gave to the cannulated cow, and it stuck.
Spawn is old and cynical after having every professor with a new idea experiment
on her. After being in academia for so long, she knows her way around
mathematics and the scientific method reasonably well, even if she's never
formally taken a college course in the sciences. She is the realist to any blog
post's optimist.
## Whelen
![Whelen ref sheet](whelen/_ref-body-perplexity.png)
Whelen is a happy-go-lucky German Shepherd/Husky mix puppy. He's been to school
once - and that was just to get neutered - so his knowledge of math and science,
heck, even of the humanities, isn't very good. He is very naive and thinks
everyone is nice and wants to be his friend, but he is also friendly to everyone
and is very vocal when he feels left out. He will step in when any blog post is
getting too technical and demand an explanation for real people (dogs?).

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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M504 256c0 136.967-111.033 248-248 248S8 392.967 8 256 119.033 8 256 8s248 111.033 248 248zm-141.651-35.33c4.937-32.999-20.191-50.739-54.55-62.573l11.146-44.702-27.213-6.781-10.851 43.524c-7.154-1.783-14.502-3.464-21.803-5.13l10.929-43.81-27.198-6.781-11.153 44.686c-5.922-1.349-11.735-2.682-17.377-4.084l.031-.14-37.53-9.37-7.239 29.062s20.191 4.627 19.765 4.913c11.022 2.751 13.014 10.044 12.68 15.825l-12.696 50.925c.76.194 1.744.473 2.829.907-.907-.225-1.876-.473-2.876-.713l-17.796 71.338c-1.349 3.348-4.767 8.37-12.471 6.464.271.395-19.78-4.937-19.78-4.937l-13.51 31.147 35.414 8.827c6.588 1.651 13.045 3.379 19.4 5.006l-11.262 45.213 27.182 6.781 11.153-44.733a1038.209 1038.209 0 0 0 21.687 5.627l-11.115 44.523 27.213 6.781 11.262-45.128c46.404 8.781 81.299 5.239 95.986-36.727 11.836-33.79-.589-53.281-25.004-65.991 17.78-4.098 31.174-15.792 34.747-39.949zm-62.177 87.179c-8.41 33.79-65.308 15.523-83.755 10.943l14.944-59.899c18.446 4.603 77.6 13.717 68.811 48.956zm8.417-87.667c-7.673 30.736-55.031 15.12-70.393 11.292l13.548-54.327c15.363 3.828 64.836 10.973 56.845 43.035z"/></svg>

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<svg
width="512px"
height="512px"
viewBox="0 0 512 512"
id="svg2"
version="1.1"
xmlns="http://www.w3.org/2000/svg"
xmlns:svg="http://www.w3.org/2000/svg"
>
<style>
svg {
background-color: transparent;
color-scheme: light dark;
}
path {
stroke: black;
fill: none;
fill-rule: evenodd;
stroke-dasharray: none;
stroke-linecap: round;
stroke-linejoin: round;
stroke-miterlimit: 4;
stroke-opacity: 1;
stroke-width: 21;
}
g {
filter: drop-shadow(7px 7px white);
}
@media (prefers-color-scheme: dark) {
path {
stroke: white;
}
g {
filter: drop-shadow(7px 7px black);
}
}
</style>
<g>
<path
d="M 76.0229 257.139 L 148.925 257.139 C 154.744 257.139 160.688 256.874 166.097 254.728 C 171.506 252.583 176.104 248.69 179.651 244.078 C 183.198 239.465 185.786 234.178 189.279 229.525 C 191.026 227.198 193.032 225.031 195.44 223.398 C 197.848 221.766 200.692 220.688 203.602 220.688 C 206.511 220.688 209.355 221.766 211.763 223.398 C 214.171 225.031 216.177 227.198 217.924 229.525 C 221.417 234.178 224.005 239.465 227.552 244.078 C 231.099 248.69 235.697 252.583 241.106 254.728 C 246.515 256.874 252.459 257.139 258.278 257.139 L 331.181 257.139"
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xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:cc="http://creativecommons.org/ns#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:svg="http://www.w3.org/2000/svg"
xmlns="http://www.w3.org/2000/svg"
width="29.935179mm"
height="8.7677584mm"
viewBox="0 0 106.06953 31.06686"
id="svg2"
version="1.1">
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id="defs4">
<style>
svg {
background-color: transparent;
color-scheme: light dark;
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width="29.935179mm"
height="8.7677584mm"
viewBox="0 0 106.06953 31.06686"
version="1.1"
xmlns="http://www.w3.org/2000/svg"
xmlns:svg="http://www.w3.org/2000/svg"
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<style>
svg {
background-color: transparent;
color-scheme: light dark;
}
path {
stroke: light-dark(black, white);
}
</style>
</defs>
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transform="translate(-201.95727,-469.32877)">
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path {
stroke: black;
fill: none;
fill-rule: evenodd;
stroke-dasharray: none;
stroke-linecap: round;
stroke-linejoin: round;
stroke-miterlimit: 4;
stroke-opacity: 1;
stroke-width: 6;
}
@media (prefers-color-scheme: dark) {
path {
stroke: white;
}
}
</style>
<g>
<path
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@ -1 +1,15 @@
$("#phone").mask("(000) 000-0000");
// Built by perplexity.ai
function maskPhoneNumber(input) {
input.addEventListener("input", function (e) {
var x = e.target.value
.replace(/\D/g, "")
.match(/(\d{0,3})(\d{0,3})(\d{0,4})/);
e.target.value = !x[2]
? x[1]
: "(" + x[1] + ") " + x[2] + (x[3] ? "-" + x[3] : "");
});
}
// Usage
var phoneInput = document.getElementById("phone");
maskPhoneNumber(phoneInput);

View file

@ -165,7 +165,18 @@
);
--container-border: light-dark(var(--swiss-brown-6), var(--eclipse-16));
--container-background: light-dark(var(--swiss-brown-4), var(--eclipse-12));
--container-border-alt: light-dark(var(--eclipse-16), var(--swiss-brown-6));
--container-background-alt: light-dark(
var(--eclipse-12),
var(--swiss-brown-4)
);
--motto-background: rgba(0, 0, 0, 0.66);
--page-button-text: var(--prickly-pear-yellow-1);
--page-button-background: var(--prickly-pear-yellow-8);
--page-button-background-hover: var(--prickly-pear-yellow-10);
--page-button-background-active: var(--prickly-pear-yellow-12);
--page-button-background-disabled: var(--prickly-pear-yellow-6);
--page-button-text-disabled: var(--eclipse-7);
/*
Fonts
@ -174,7 +185,10 @@
"URW Bookman L", "Georgia Pro", Georgia, serif;
--font-family-slab-serif: Rockwell, "Rockwell Nova", "Roboto Slab",
"DejaVu Serif", "Sitka Small", serif;
--font-family-transitional: Charter, "Bitstream Charter", "Sitka Text",
Cambria, serif;
--font-family-system-ui: system-ui, sans-serif;
--font-family-monospace: "Nimbus Mono PS", "Courier New", monospace;
}
/*
@ -186,6 +200,26 @@ html {
font-family: var(--font-family-slab-serif);
}
body {
display: flex;
flex-direction: column;
min-height: 98vh;
margin: 0 8px;
align-items: center;
}
.container {
max-width: min(60rem, 100vw - 2rem);
}
.footer-inner {
width: min(60rem, 100vw - 2rem);
display: flex;
justify-content: space-between;
align-items: center;
flex-shrink: 0;
}
a {
color: var(--link-color);
}
@ -235,6 +269,39 @@ nav a:hover {
background-color: var(--nav-button-background-hover);
}
main {
display: flex;
flex-direction: column;
}
article p,
.character-dialog-text,
article li {
font-family: var(--font-family-transitional);
font-size: 1.15rem;
text-justify: inter-word;
text-align: justify;
hyphens: auto;
}
article > p {
text-indent: 2ch;
line-height: 1.5em;
}
article h1 + p,
article h2 + p,
article h3 + p,
article h4 + p,
article h5 + p,
article h6 + p {
text-indent: 0;
}
.footnotes p {
font-size: smaller;
}
figure {
border-color: var(--container-border);
border-width: 1.5pt;
@ -244,33 +311,41 @@ figure {
padding: 1.25pt;
}
blockquote {
figure:has(blockquote) {
background: linear-gradient(
to right,
var(--container-border),
var(--container-background)
);
border-left: 5px solid black;
padding: 1px;
padding-left: 6px;
border: none;
border-radius: 0;
border-left: 6px solid black;
padding: 0.25em 1em;
}
blockquote small::before {
figure:has(blockquote) > blockquote {
margin: 0;
}
figure:has(blockquote) > figcaption::before {
content: "\2014 \00A0";
}
blockquote small {
figure:has(blockquote) > figcaption {
margin-top: -1em;
margin-bottom: 1em;
font-size: 80%;
}
footer {
display: flex;
flex-direction: column;
align-items: center;
background-color: var(--container-background);
margin: 0 0 -1em -1em;
width: calc(100% - 1em);
padding: 0.25em 1.25em;
display: flex;
justify-content: space-between;
align-items: center;
font-size: smaller;
}
form {
@ -295,6 +370,25 @@ textarea:invalid {
border-bottom-color: var(--ear-tag-red);
}
code {
font-family: var(--font-family-monospace);
}
/*
abbr element "tooltip" for mobile
heavily modified from https://bitsofco.de/making-abbr-work-for-touchscreen-keyboard-mouse/
*/
abbr[title]:focus::after {
content: attr(title);
background-color: #1e1e1e;
color: #fff;
border-radius: 0.125em;
box-shadow: 1px 1px 5px 0 rgba(0, 0, 0, 0.4);
font-size: smaller;
padding: 0.5em;
display: block;
}
/*
Container-type helper classes
*/
@ -304,6 +398,12 @@ textarea:invalid {
width: 100%;
}
.motto-wrapper {
display: block;
flex: 1 0 30vh;
margin-bottom: 1em;
}
.motto {
position: relative;
display: grid;
@ -313,6 +413,7 @@ textarea:invalid {
font-weight: 600;
text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
width: 100%;
height: 100%;
padding: 0 0 0.5em 0;
border-radius: 0.25rem;
z-index: 10;
@ -340,6 +441,7 @@ textarea:invalid {
.motto .motto-inside h1 {
background-color: var(--motto-background);
padding: 0.5rem;
}
.card {
@ -351,11 +453,23 @@ textarea:invalid {
margin: 1rem 0;
padding: 0.5rem;
padding-top: 0;
position: relative;
display: flex;
flex-direction: column;
}
.card-content {
display: flex;
flex-direction: column;
flex-grow: 1;
}
.card-header {
display: flex;
flex-direction: row;
justify-content: space-between;
flex-grow: 1;
}
.card-link {
white-space: nowrap;
display: inline-flex;
@ -363,22 +477,26 @@ textarea:invalid {
align-items: center;
text-underline-offset: 0.25em;
backface-visibility: hidden;
margin: 0 0.5em;
margin: 0.1em 0.25em;
padding: 0.33em;
padding-right: 0.45em;
}
.card-body {
margin-top: 0.33em;
}
.category-button {
position: absolute;
top: 1em;
right: 1em;
display: grid;
align-items: center;
justify-items: center;
color: white;
background-color: var(--ear-tag-red);
border-radius: 0.5em;
padding: 1em;
}
.card-title a h3 {
margin-right: 3.5em;
margin: 1em;
height: 2em;
aspect-ratio: 1 / 1;
}
.card-title > a {
@ -421,6 +539,118 @@ textarea:invalid {
fill: currentColor;
}
.account-bucket {
display: grid;
grid-template-columns: 3em 1em 1fr;
background-color: var(--container-background-alt);
padding: 1em 0;
border-radius: 0.5em;
border-color: var(--container-border-alt);
border-style: solid;
color: light-dark(white, black);
margin: 1em 0;
align-items: center;
}
.account-bucket h3 {
align-self: center;
writing-mode: sideways-lr;
}
.account-bucket details {
grid-column: 3;
}
.account-bucket .crypto-list {
grid-column: 3;
max-width: 100%;
}
.account-list {
display: flex;
justify-content: space-between;
flex-wrap: wrap;
width: calc(100% - 1.5em);
}
.account-bucket .account-list {
grid-column: 3;
}
.account-list a {
font-size: xx-large;
text-decoration: none;
color: inherit;
padding: 0.5em;
}
.account-list a:hover {
background-color: var(--container-background);
border-color: var(--container-border);
border-width: 2.5px;
border-radius: 0.5em;
border-style: solid;
padding: calc(0.5em - 2.5px);
}
figcaption .mono {
color: light-dark(black, white);
overflow-wrap: anywhere;
}
.crypto-list details {
max-width: 100%;
}
.character-dialog {
display: grid;
width: calc(100% - 1rem);
grid-template-columns: 5rem 1fr;
grid-template-rows: auto auto;
gap: 1em;
margin: 0.5rem;
}
.character-avatar {
display: grid;
max-width: 100%;
grid-row: 1 / span 2;
grid-column: 1;
align-self: start;
align-items: center;
justify-items: center;
min-width: 5rem;
min-height: 5rem;
border-radius: 5rem;
align-items: center;
border-style: solid;
border-color: var(--nav-button-background-hover);
background-color: var(--cowhide-2);
}
.character-avatar > img {
max-width: 4rem;
max-height: 4rem;
}
.character-dialog-bubble {
display: grid;
grid-template-rows: auto auto;
align-self: start;
border-radius: 0.5em;
border-width: 0.2rem;
border-color: var(--nav-button-background);
border-style: outset;
row-gap: 0.5rem;
padding: 0.5rem;
background-color: var(--container-border);
min-height: 5rem;
}
.character-dialog-title {
font-weight: bolder;
}
/*
Helper classes
*/
@ -431,6 +661,9 @@ textarea:invalid {
.img-fluid {
max-width: 100%;
height: auto;
display: grid;
align-items: center;
justify-items: center;
}
.float-left {
@ -443,6 +676,68 @@ textarea:invalid {
max-width: 100%;
}
.pagination {
display: flex;
justify-content: center;
gap: 0.5em;
padding-left: 0;
}
.pagination li {
list-style-type: none;
color: var(--nav-button-text);
}
.pagination li a {
color: var(--page-button-text);
background-color: var(--page-button-background);
border-radius: 0.05rem;
border-style: outset;
border-width: 0.2rem;
border-color: var(--page-button-background);
width: 2rem;
max-width: 1.8vw;
aspect-ratio: 1 / 1;
display: flex;
justify-content: center;
align-items: center;
margin: 0.2rem;
text-decoration: none;
padding: 0 0.2rem;
font-family: var(--font-family-system-ui);
}
.pagination li a:hover {
background-color: var(--page-button-background-hover);
}
.pagination li.active a {
background-color: var(--page-button-background-active);
}
.pagination li.disabled a {
cursor: not-allowed;
background-color: var(--page-button-background-disabled);
color: var(--page-button-text-disabled);
border-style: solid;
}
.mono {
font-family: var(--font-family-monospace);
font-weight: 600;
}
.bolder {
font-weight: bolder;
background-color: rgba(0, 0, 0, 0.33);
border-radius: 0.25em;
}
/* Specific elements */
#content {
flex: 1 0 max-content;
}
/*
Desktop screen size adjustments
*/
@ -480,6 +775,15 @@ textarea:invalid {
flex-direction: row;
}
.person-profile {
position: sticky;
top: 0;
width: 300px;
min-width: 20vw;
max-width: 30vw;
margin-bottom: 5vh;
}
/*
Helper classes
*/
@ -501,20 +805,19 @@ textarea:invalid {
margin-right: 1rem;
}
.card-header {
.card-thumbnail {
width: 20vw;
flex-shrink: 0;
}
.card-body {
margin-left: 1rem;
.card-thumbnail:not(
:has(~ .card-content > .card-header > .card-title > .dt-published)
) {
width: 10vw;
}
.bolder {
font-weight: bolder;
background-color: rgba(0, 0, 0, 0.33);
border-radius: 0.25em;
padding: 0.25em 0.75em 0.5em 0.33em;
.card-content {
margin-left: 1rem;
}
/*
@ -534,79 +837,3 @@ textarea:invalid {
clear: both;
}
} /* end @media */
@media (prefers-reduced-motion: no-preference) {
@supports (animation-timeline: scroll()) and (animation-range: 0 50vh) {
@keyframes sticky-header {
from {
height: 50vh;
top: 6rem;
}
to {
height: 10vh;
top: -1rem;
}
}
@keyframes blurry-header {
from {
filter: blur(0);
}
to {
filter: blur(2px);
}
}
@keyframes transparent-text-bg {
from {
background-color: var(--motto-background);
}
to {
background-color: rgba(0, 0, 0, 0);
}
}
main,
footer {
position: relative;
top: 55vh;
}
.motto {
position: fixed;
top: 12rem;
animation: sticky-header linear forwards;
animation-timeline: scroll();
animation-range: 0 50vh;
}
.motto::before {
filter: blur(12px);
top: 2rem;
animation: blurry-header linear forwards;
animation-timeline: scroll();
animation-range: 0 50vh;
}
.motto-inside h1 {
animation: transparent-text-bg linear forwards;
animation-timeline: scroll();
animation-range: 0 40vh;
}
@media (min-width: 768px) {
.motto {
width: calc(100% - 8rem);
}
.motto::before {
top: 0;
}
}
} /* end @supports */
} /* end @media */

View file

@ -0,0 +1,68 @@
@media (prefers-reduced-motion: no-preference) {
@supports (animation-timeline: scroll()) and (animation-range: 0 50vh) {
@keyframes sticky-header {
from {
flex-basis: 30vh;
}
to {
flex-basis: 0;
}
}
.motto-wrapper {
position: sticky;
top: 0;
z-index: 100;
animation: sticky-header linear forwards;
animation-timeline: scroll();
animation-range: 0 30vh;
contain: content;
}
@keyframes blurry-header {
from {
filter: blur(0);
}
to {
filter: blur(3.5px);
}
}
.motto::before {
animation: blurry-header linear forwards;
animation-timeline: scroll();
animation-range: 0 30vh;
}
@keyframes transparent-text-bg {
from {
background-color: var(--motto-background);
text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
}
to {
background-color: rgba(0, 0, 0, 0);
text-shadow: 0 0 10px rgba(0, 0, 0, 1);
}
}
.motto-inside h1 {
animation: transparent-text-bg linear forwards;
animation-timeline: scroll();
animation-range: 0 30vh;
}
.motto-inside h1 small {
display: block;
font-size: calc(1vh + 1vw);
line-height: calc(1vh + 1vw);
}
main section {
margin: 0 0.25em;
contain: content;
}
} /* end @supports */
} /* end @media */

View file

@ -1,7 +1,9 @@
baseURL = "https://millironx.com"
languageCode = "en-us"
title = "MillironX"
paginate = 5
title = "Milliron X"
[pagination]
pagerSize = 5
[build]
writeStats = true
@ -9,42 +11,47 @@ writeStats = true
[Params]
cardImage = "saddles"
motto = ""
images = ["saddles.jpg"]
categories = []
[taxonomies]
people = "people"
tag = "tags"
category = "categories"
[module]
[mediaTypes]
[[module.mounts]]
source = "static"
target = "static"
[mediaTypes."application/atom+xml"]
suffixes = ["xml"]
[[module.mounts]]
source = "assets/graphics"
target = "assets/graphics"
[outputs]
home = ["atom", "html", "manifest"]
page = ["html"]
section = ["html", "atom"]
term = ["html", "atom"]
[[module.mounts]]
source = "assets/images"
target = "assets/images"
[outputFormats]
[[module.mounts]]
source = "assets/scripts"
target = "assets/scripts"
[outputFormats.atom]
mediaType = "application/atom+xml"
baseName = "feed"
[[module.mounts]]
source = "assets/styles"
target = "assets/styles"
[outputFormats.manifest]
name = "manifest"
baseName = "manifest"
mediaType = "application/json"
notAlternative = "true"
[[modules.mounts]]
source = "assets/scripts/custom"
target = "assets/scripts/custom"
[markup]
[[module.mounts]]
source = "./node_modules/jquery/dist"
target = "assets/scripts/jquery"
[markup.goldmark]
[[module.mounts]]
source = "./node_modules/jquery-mask-plugin/dist"
target = "assets/scripts/jquery-mask-plugin"
[markup.goldmark.parser]
[markup.goldmark.parser.attribute]
block = true
[markup.goldmark.renderHooks]
[markup.goldmark.renderHooks.link]
enableDefault = true

View file

@ -1,12 +1,11 @@
---
title: Home
cardImage: charolette
cardImageDescription: She almost looks like she's in her native country again.
motto: <small>My name is Thomas Christensen</small><br />I am Milliron X
description: The homepage of Thomas A. Christensen II
layout: _default/list
menu:
main:
name: Home
params:
icon: home
weight: -1000
@ -29,58 +28,3 @@ to a sense of withholding, prestige, and power.
Together, these two symbols represent the qualities I strive for in each of my
works: authenticity, originality, power, depth, and prestige.
## Who am I?
{{< imgproc me-and-lady Resize "768x" "float-right" >}} Image courtesy
[Guy McCutcheon Photography](https://www.guymccutcheon.com/) {{< /imgproc >}}
I am
- 🧬 A bioinformatician (by profession)
- 📐 An engineer (by education)
- 🐂 A rancher (by lifestyle)
- 🖥️ A techie (self-taught)
- 🎥 And a filmmaker (at heart)
I've got a soft spot for Brown Swiss dairy cows (just in case you couldn't tell
by the pictures), and am sometimes called "one of those crazy, Wyoming dairy cow
people." I love anything to do with cattle or technology, but especially
anything to do with both of them.
_{{< abbr "Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist" >}}Christian{{< /abbr >}},
American, Convervative, Pro-gun, Heterosexual - any questions?_
## Where am I?
{{< imgproc wy-in-ks Resize "768x" "float-left" / >}}
I am a Wyomingite sojurning in Kansas. That ought to lead to some interesting
stories.
Around the web you can find me at (in order of subjective importance)
- {{< fa github >}} GitHub: [@MillironX](https://github.com/MillironX)
- {{< fa orcid >}} ORDiD:
[0000-0003-1219-9320](https://orcid.org/0000-0003-1219-9320)
- {{< fa gitlab >}} GitLab: [@MillironX](https://gitlab.com/MillironX)
- {{< fa vimeo >}} Vimeo:
[Thomas Christensen II](https://vimeo.com/tchristensenii)
- {{< fa stack-overflow >}} StackExchange:
[Milliron X](https://stackexchange.com/users/4863541/milliron-x)
- {{< fa steam >}} Steam: [MillironX](https://steamcommunity.com/id/millironx)
This list is intended to verify my identity on other sites. Please do _not_ use
it as fodder to try and "follow" me on each of these platforms. I stand with
RMS:
{{< blockquote "Richard Stallman _in_ [If you feel your organization needs a 'presence' in Facebook](https://stallman.org/facebook-presence.html)" >}}
Facebook is a bad place for a person to be. When people find us on Facebook, we
lead them away from Facebook and then talk with them elsewhere.
{{< /blockquote >}}
I typically don't respond to inquiries made on these platforms. Please use
[my contact form](/contact), instead.
</div>
</div>

View file

@ -14,13 +14,15 @@ menu:
fa-thumbnail: university
---
> I have spent too long in school and not enough time in the middle of nowhere
>
> -- Baxter Black, DVM
During my time in academia, I have amassed a few notable accomplishments. Of
course, as the old saying goes, "if it isn't published, then it never happened,"
so here is a list of everything that actually happened. Several of these
articles are also available on
[my Google Scholar page](https://scholar.google.com/citations?user=gbP4RDgAAAAJ),
but this is the complete list.
so here is a list of everything that actually happened.
Academia is not the be-all and end-all of life (contrary to what your professor
might have told you). I've found the side-effects to be similar to this guy's:
<!-- prettier-ignore-start -->
> I have spent too long in school and not enough time in the middle of nowhere,
> and it has inhibited my ability to learn the simple things.
{author="Baxter Black, DVM"}
<!-- prettier-ignore-end -->

View file

@ -0,0 +1,42 @@
---
title: "Genetic analysis of bovine papillomas"
date: 2024-09-19
categories:
- poster
people:
- Thomas A. Christensen II
- Rachel Palinski
- Bob Gentry
journal:
"National Association of Animal Breeders Technical Conference Student Poster
session"
location: "Middleton, Wisconsin"
---
Bovine papillomavirus (BPV) is a major cause of reproductive failure in cattle.
In bulls, penile papillomas caused by BPV may cause reluctance to breed, and is
always a cause to fail an animal on a breeding soundness exam. Historically, it
has been thought that BPV was transmitted via direct contact and could be
controlled by managing clinically presenting animals in the herd, but more
recent evidence suggests alternative modes of transmission. BPV has been found
repeatably in clinically healthy animals, and in non-cutaneous secretions
including milk, blood, urine and semen. Currently, no commercially available BPV
vaccine uses isolated viral particles and naturally occurring virus does not
produce cross-protective immunity. In order to develop a proper vaccine for
penile papillomas further studies are required to understand the epidemiology of
BPV in herds. While vulvar, cutaneous, and mammary papillomas have been
genotyped in recent years, this information is not available for penile
papillomas. In this study there were 31 submissions, collected from 7 states,
NE, KS, NY, TX, AL, MO and SD (14 different cattle operations) Samples were
collected between August of 2022 and April 2024. Twenty-two submissions were
penile papillomas and with pooling of samples represented over 50 penile
papillomas. Samples were metagenomically sequenced at the Kansas State
Veterinary Diagnostic Lab, and the genotype of each sample was determined using
the phylogenetic analysis. The clade of each sample was determined by aligning
consensus sequences of the L1 gene (used for both for phylogeny and as a vaccine
target) using MAFFT and a maximum-likelihood phylogeny generated in Mega X.
Analysis found that all penile papilloma submissions were composed of BPV type
2, with one sample showing co-infection with BPV type 1. Conversely, cutaneous
and teat papillomas had BPV genotypes that were more variable with genotypes of
1,2,7,12,14,29 and 40. These results indicate that BPV type 2 and type 1 provide
a unified target for bovine penile papilloma vaccine development.

View file

@ -0,0 +1,14 @@
---
title:
"Got Warts? Bovine Papillomavirus Pathogenesis, Transmission, and Vaccination"
date: 2024-09-19
featured: false
categories:
- presentation
people:
- Bob Gentry
- Thomas A. Christensen II
journal:
"National Association of Animal Breeders Technical Conference Sponsor session"
location: "Middleton, Wisconsin"
---

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@ -1,6 +1,7 @@
---
title:
"nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling"
"nf-core/taxprofiler: highly parallelised and flexible pipeline for
metagenomic taxonomic classification and profiling"
date: 2023-10-23
featured: true
tags:
@ -16,9 +17,25 @@ people:
- Maxime Borry
- Mahwash Jamy
- nf-core community
- James A. Fellows Yate
- James A. Fellows Yates
link: https://doi.org/10.1101/2023.10.20.563221
journal: bioRxiv
---
Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.
Metagenomic classification tackles the problem of characterising the taxonomic
source of all DNA sequencing reads in a sample. A common approach to address the
differences and biases between the many different taxonomic classification tools
is to run metagenomic data through multiple classification tools and databases.
This, however, is a very time-consuming task when performed manually -
particularly when combined with the appropriate preprocessing of sequencing
reads before the classification. Here we present nf-core/taxprofiler, a highly
parallelised read-processing and taxonomic classification pipeline. It is
designed for the automated and simultaneous classification and/or profiling of
both short- and long-read metagenomic sequencing libraries against a 11
taxonomic classifiers and profilers as well as databases within a single
pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the
pipeline benefits from high levels of scalability and portability, accommodating
from small to extremely large projects on a wide range of computing
infrastructure. It has been developed following best-practise software
development practises and community support to ensure longevity and adaptability
of the pipeline, to help keep it up to date with the field of metagenomics.

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@ -0,0 +1,54 @@
---
title: "YAVSAP: versatile viral quasispecies analysis for veterinary samples"
date: 2024-03-05
featured: false
categories:
- presentation
people:
- Thomas A. Christensen II
- Steven Stancic
- Andrea Lu
- Dana Mitzel
- William Wilson
- Rachel Palinski
journal: "Phi Zeta Research Day"
location: "Manhattan, Kansas"
tags:
- virus
- quasispecies
- next-generation sequencing
- pipeline
awards:
- "2nd Place Large Animal Applied Research Presentation"
link: "/academia/yavsap/yavsap.pdf"
---
Viral populations within an infected host are composed of viral particles with a
spectrum of genetic mutations rather than a unified genome. This phenomenon is
referred to as viral "quasispecies," and has been useful for the understanding
of viral transmission and early detection of new viral variants. Next generation
sequencing (NGS) has enabled the study of these quasispecies for many viral
species, notably Influenza A and B, Human Immunodeficiency Virus (HIV), Foot and
Mouth Disease Virus (FMDV), and Severe Acute Respiratory Syndrome Coronavirus 2
(SARS CoV2), and established protocols and computer analysis tools have been
developed for these species. Some of the most important viruses, such as
emerging and exotic disease agents, however, do not have replicatable protocols
or software tools capable of producing valid output from their sequence data.
Here, we present Yet Another Viral Subspecies Analysis Pipeline (YAVSAP). YAVSAP
is a fully automated bioinformatic pipeline built from the ground up to identify
and analyze viral quasispecies of any arbitrary virus in human and veterinary
samples. YAVSAP provides reference-based genome mapping of both long- and
short-read sequencing reads to any reference genome that the user chooses,
identifies subconsensus variants and haplotypes, and assesses the phylogenies of
all viral sequences found within a sample. YAVSAP is written in Nextflow and
conforms to the nf-core initiative's standards, which allows it to run on
low-end computers, high performance computing (HPC) clusters, or anything in
between with zero configuration. YAVSAP has been tested on viruses of interest
to veterinary medicine and public health, including Japanese Encephalitis Virus
(JEV), Influenza D Virus (IDV), Bovine Coronavirus (BCoV), SARS CoV2, and Rift
Valley Fever Virus (RVFV), and can correctly identify consensus genomes and
quasispecies within samples containing each of these viruses. This tool provides
a means for biologists with little bioinformatic experience to analyze deep
sequence data while correcting for many of the pitfalls associated with previous
and current analysis platforms. YAVSAP is open source software and is publicly
available at https://github.com/ksumngs/yavsap.

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@ -1,5 +1,15 @@
---
draft: true
title: "Blogroll"
menu:
main:
name: Blogroll
params:
icon: scroll
weight: -800
cardImage: eclipse
cardImageDescription: |
Randall Monroe was right. Eclipses are way cooler than they sound.
suppressRss: true
---
## Stuff I like on the internet
@ -7,39 +17,4 @@ draft: true
This section of a website used to be called a "blogroll." I don't know what it's
called now. In order to be on this list, I must have been subscribed or
otherwise follow it for over a year. It's amazing how little stuff on the
internet can't make that cut.
### [Thru the Bible](https://ttb.org/)
I'm convinced that the word of God is timeless, and we need less commentary and
cherry-picking of favorite verses, and more study of the complete Bible. Dr.
McGee does just that.
### [Enoch the Cow Vet](https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw)
A veterinarian/agricultural channel that doesn't make me cringe. "God built
these things for cows for vets ... [there are] so many aspects of the cow that
are just designed for vets." Amen, Enoch. Amen.
### [Proglogion](https://blog.drwile.com/)
The blog of my high school science teacher (of sorts). It is refreshing to find
a creationist who can still think critically. I love his "bad sermon
illustrations" posts.
### [The Milk Check](https://www.jacoby.com/learning-center/podcasts-overview/)
A pragmatic inside look at dairy marketing. I only understand half of what
they're talking about, but I learn something new every episode.
### [Brian Harry's Blog](https://devblogs.microsoft.com/bharry/)
Where else are you going to find a blog about cows _and_ version control? The
blog is basically dead now, but it's still fun to go back and read the farm
stories.
### [Car Talk](https://cartalk.com/)
The antics of these guys are enough to make anyone have to pull over to the side
of the road from laughing too much. I dread the day when NPR fully axes the only
good program to cross their airwaves.
internet can make that cut.

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@ -0,0 +1,8 @@
---
title: Brian Harry's blog
link: https://devblogs.microsoft.com/bharry/
---
Where else are you going to find a blog about cows _and_ version control? The
blog is basically dead now, but it's still fun to go back and read the farm
stories.

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@ -0,0 +1,8 @@
---
title: Car Talk
link: https://cartalk.com
---
The antics of these guys are enough to make anyone have to pull over to the side
of the road from laughing too much. I dread the day when NPR fully axes the only
good program to cross their airwaves.

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@ -0,0 +1,8 @@
---
title: Enoch the Cow Vet
link: https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw
---
A veterinarian/agricultural channel that doesn't make me cringe. "God built
these things for cows for vets ... [there are] so many aspects of the cow that
are just designed for vets." Amen, Enoch. Amen.

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@ -0,0 +1,8 @@
---
title: Proslogion
link: https://blog.drwile.com
---
The blog of my high school science teacher (of sorts). It is refreshing to find
a creationist who can still think critically. I love his "bad sermon
illustrations" posts.

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@ -0,0 +1,8 @@
---
title: Thru the Bible
link: https://ttb.org
---
I'm convinced that the word of God is timeless, and we need less commentary and
cherry-picking of favorite verses, and more study of the complete Bible. Dr.
McGee does just that.

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@ -0,0 +1,75 @@
{{ $data := dict }}
{{ $url := "https://code.millironx.com/api/v1/users/millironx/repos" }}
{{ with try (resources.GetRemote $url) }}
{{ with .Err }}
{{ errorf "Unable to get remote resource %s: %s" $url . }}
{{ else with .Value }}
{{ $data = . | transform.Unmarshal }}
{{ end }}
{{ else }}
{{ errorf "Unable to get remote resource %s" $url }}
{{ end }}
{{ range $data }}
{{/* Get tags of this repository. To quote Steve Edstrom, "If it doesn't have a
tag, it doesn't count."
*/}}
{{ $tagUrl := print "https://code.millironx.com/api/v1/repos/millironx/" .name "/tags" }}
{{ $tagData := dict }}
{{ with try (resources.GetRemote $tagUrl) }}
{{ with .Err }}
{{ errorf "Unable to get remote resource %s: %s" $tagUrl . }}
{{ else with .Value }}
{{ $tagData = . | transform.Unmarshal }}
{{ end }}
{{ else }}
{{ errorf "Unable to get remote resource %s" $tagUrl }}
{{ end }}
{{ $firstTag := index $tagData 0 }}
{{ if $firstTag }}
{{ $dates := dict "date" (time.AsTime $firstTag.commit.created) }}
{{ $content := dict "mediaType" "text/markdown" "value" .description }}
{{ $categories := slice "code" }}
{{ $people := slice "Thomas A. Christensen II" }}
{{ $link := .html_url }}
{{ $featured := (gt .stars_count 0) }}
{{ $tags := .topics }}
{{ $params := dict
"categories" $categories
"people" $people
"link" $link
"featured" $featured
"tags" $tags
}}
{{ $page := dict
"content" $content
"dates" $dates
"title" .name
"path" .name
"params" $params
}}
{{ $.AddPage $page }}
{{ $item := . }}
{{ with $url := $item.avatar_url }}
{{ with resources.GetRemote $url }}
{{ with .Err }}
{{ errorf "Unable to get remote resource %s: %s" $url . }}
{{ else }}
{{ $content := dict "mediaType" .MediaType.Type "value" .Content }}
{{ $resource := dict
"content" $content
"path" (print $item.name "/thumbnail." .MediaType.SubType)
}}
{{ $.AddResource $resource }}
{{ end }}
{{ else }}
{{ errorf "Unable to get remote resource %s" $url }}
{{ end }}
{{ end }}
{{ end }}
{{ end }}

14
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---
title: Coding projects
menu:
main:
name: Code
params:
icon: code
link: https://code.millironx.com
weight: 50
fa-thumbnail: code
link: https://code.millironx.com
---
A Forgejo instance dedicated to cows and technology

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@ -15,12 +15,21 @@ menu:
weight: 1
fa-thumbnail: file-signature
validation: true
suppressRss: true
---
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<form action="https://usebasin.com/f/787df7bfd22e" method="post">
<fieldset>
<legend>Contact Me</legend>
<input type="hidden" name="_gotcha" />
<input
type="hidden"
class="form-control"
id="honorific"
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placeholder="Dr."
/>
<label for="name">Name</label>
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@ -65,6 +74,13 @@ validation: true
required
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title: Login
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name: Login
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link: https://youtu.be/dQw4w9WgXcQ
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The password is "Open sesame!"

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title: "Thomas A. Christensen II"
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homepage: https://millironx.com
accounts:
google-scholar: gbP4RDgAAAAJ
github: MillironX
hacker-news: millironx
matrix: "@millironx:matrix.org"
orcid: 0000-0003-1219-9320
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---
Hi! I'm Thomas. I love anything to do with cattle or technology, but especially
anything to do with both of them. I spend way more time in beef country with
beef cows, but I've got a soft spot for Brown Swiss dairy cows (just in case you
couldn't tell by the pictures). I've worn a lot of different hats:
| | |
| ------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| First and foremost | ✝️ {{< abbr "Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist" >}}Christian{{< /abbr >}} |
| Location | 🦬 {{< abbr "I want to keep claiming Wyoming, but they're pretty strict about residency there, and I don't want to repeat the Liz Cheney fishing license incident" >}}Wyomingite{{< /abbr >}} sojourning in 🌻 {{< abbr "Yes, Toto, we are in Kansas now" >}}Kansas{{< /abbr >}} (this ought to be interesting) |
| Education | 📐 {{< abbr "noun. A person who cannot build cool things like airplanes or bridges, but can blow up an entire neighborhood and kill dozens of children by misplacing a decimal point. See also: self-hating chemist" >}}Chemical Engineer{{< /abbr >}} |
| Profession | 🧬 {{< abbr "I do genetics and computers" >}}Bioinformatician{{< /abbr >}} and 🐄🩺 {{< abbr "I can't rope well enough to be a cowboy, so being a cow doctor will have to suffice" >}}Veterinarian{{< /abbr >}} (soon!) |
| Politics | 🗽 {{< abbr "Refers to the belief in natural social and political laws created by God that are as inflexible as the laws of physics" >}}Juris naturalist{{< /abbr >}} |
| Hobbies | 🎥 {{< abbr "Storytelling at 24 frames per second" >}}Filmmaker{{< /abbr >}} and 💃🏻 {{< abbr "Square dancing is more musically rigid and is standardized across the country. Swing dancing is more freeform and differs regionally. It's like the difference between classical music and jazz. I like both." >}}Square/swing dancer{{< /abbr >}} |

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@ -0,0 +1,20 @@
---
title: "ChemE Cows"
cardImage: stable-diffusion-cheme-cow-08
cardImageDescription: |
black and white dairy cow wearing a bright yellow hard hat at an oil refinery on a clear sunny day
Fooocus v2.5.5 realisticStockPhoto_v20.safetensors
Hopefully someday I can replace this with a real image
motto:
ChemE Cows<br /><small>A blog about cattle, technology, or anything remotely
affecting either of them</small>
menu:
main:
name: Blog
params:
icon: block-quote
weight: 2
fa-thumbnail: block-quote
---
A blog where I might post stuff some day.

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@ -0,0 +1,104 @@
---
title:
"On Baptist habits (or why Baptist churches feel like they're run by the
Mafia)"
date: 2024-03-01
people:
- Thomas A. Christensen II
draft: true
tags:
- religion
- baptist
- christianity
- love
- doctrine
featured: true
categories:
- blog
---
<!--
This is not a real blog post - this is just an idea for a provocative article
that I fed into Llama3.2 to generate some text that is slightly more
interesting than lorem ipsum. Gee howdy, is this writing crap, but I have
committed it to the repository so I can rebase around it. If you are here
reading this somehow, please understand that these are not my thoughts.
-->
In the grand tapestry of American religiosity, there exists a peculiar breed of
Christian denomination that stands out for its unique blend of fervent devotion
and...let's be honest, a hint of authoritarianism. I'm, of course, referring to
Baptist churches. Yes, those churches that make you wonder if they're being run
by the Mafia.
Now, before I proceed, let me just clarify that this isn't an attempt to
disparage the good people who worship in these esteemed institutions. No, no,
nothing like that. It's merely a case of observational reporting, where I'm
poking around the fringes of Baptist culture to get a better understanding of
what makes them tick.
As someone who's spent considerable time within the fold (hello, 20+ years of
being born again), I've come to realize that there are certain habits,
practices, and attitudes that seem endemic to Baptist churches. Now, keep in
mind that this isn't a generalization, but rather an observation born out of
personal experience.
One of these habits is an extraordinary level of fervor and zealotry. Baptists
tend to be deeply invested in their faith, often to the point where it borders
on fanaticism. I've seen folks who will passionately argue for or against just
about anything that's perceived as contrary to their interpretation of
scripture. Now, while this can be a laudable trait in moderation, excessive
fervor can quickly turn toxic.
Another peculiar habit of Baptist churches is an unsettling preoccupation with
hierarchy and authority. It's not uncommon to see senior pastors wielding near
absolute power within the church, often based on factors such as age,
experience, or heaven forbid personal popularity. This can lead to a culture
where dissenting voices are stifled, and nonconformity is discouraged.
The worship services themselves often feel more like formal lectures or
performances than genuinely communal gatherings. Don't get me wrong; I love a
good hymn or sermon as much as the next person, but sometimes it feels like
you're trapped in a 90-minute lecture on theology. And if you're sitting too far
forward, forget about trying to contribute to the conversation your
participation will be met with stern disapproval.
In addition, there's an omnipresent air of suspicion and mistrust that seems to
pervade every aspect of Baptist life. If someone doesn't toe the party line,
they're often met with swift reprimand or outright ostracism. This creates a
toxic environment where people feel pressured into conformity rather than being
encouraged to explore their own spirituality.
Of course, there are always exceptions to the rule, just like in any other human
endeavor. I've encountered Baptist churches that embody the very opposite of
these described habits places where worship is genuine, inclusive, and
welcoming, where individual freedom and creativity are cherished, and where the
emphasis is on community rather than control.
So what drives this peculiar breed of authoritarianism within some Baptist
churches? Is it a genuine misunderstanding of scripture, or perhaps a result of
historical context? Or is there something deeper at play perhaps an inherent
tension between the democratic values of American society and the hierarchical
structures of traditional Christianity?
These questions are central to my exploration of this topic. I'll delve into the
complexities of Baptist history, the role of patriarchal ideology, and the ways
in which cultural and social factors have shaped the institution over time.
In conclusion, while I'm not ready to declare war on all things Baptist just yet
(although, I must admit, it's tempting), I do hope that this exploration will
shed some light on a fascinating aspect of American religiosity. Perhaps,
through a better understanding of these peculiar habits and practices, we can
foster a more inclusive and compassionate community one where faith and
conviction are tempered by empathy and respect for differing viewpoints.
Ultimately, as someone who's found their own spiritual home within the Baptist
fold, I believe it's essential to approach this conversation with sensitivity,
curiosity, and an open mind. By embracing our shared humanity rather than
perpetuating artificial divisions, we can work towards creating a more vibrant
tapestry of faith in America one that celebrates diversity while remaining
committed to core principles of love and service.
But for now, I'll leave you with these final thoughts on Baptist habits habits
that may seem baffling or even disturbing at times, but are ultimately part of
what makes the Baptist experience so richly textured.

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