feat: Add character-dialog shortcode and stylesheet

There has been a massive uptick in spam within the past two weeks. A
form field called `_gotcha` is a little on-the-nose, so as a first pass
effort, rename the field to something that sounds more legitimate for a
contact form. More involved strategies will be put in place, but this is
a quick and dirty fix that is worth a try based on the time involved.

.envrc

@@ -1,2 +1,4 @@
 use flake
 layout node
+mkdir -p "${HOME}/Library/Application Support/SourceGit"
+echo "${PATH}" > "${HOME}/Library/Application Support/SourceGit/PATH"

.gitignore

@@ -161,3 +161,31 @@ fontawesome-pro-6.3.0-web
 
 ### Nix Flake gitignore ###
 result
+
+### MacOS gitignore ###
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk

.prettierignore

@@ -0,0 +1 @@
+layouts/_default/index.manifest.json

.prettierrc

@@ -4,3 +4,6 @@ overrides:
   - files: "*.html"
     options:
       parser: "go-template"
+  - files: "*.gotmpl"
+    options:
+      parser: "go-template"

.woodpecker.yml

@@ -1,14 +1,15 @@
 when:
   branch: master
-  event: push
+  event:
+    - push
+    - cron
+  cron: "weekly-build"
 
 steps:
   - name: Build site
-    image: nixos/nix:2.24.11
+    image: hugomods/hugo:std-base-non-root-0.141.0
     commands:
-      - echo 'experimental-features = flakes nix-command' >> /etc/nix/nix.conf
-      - nix build
-      - mkdir public && cp -av result/* public
+      - hugo --minify
   - name: Deploy to pages
     image: codeberg.org/xfix/plugin-codeberg-pages-deploy:1
     settings:

.zed/settings.json

@@ -0,0 +1,13 @@
+{
+  "languages": {
+    "HTML": {
+      "formatter": {
+        "external": {
+          "command": "prettier",
+          "arguments": ["--stdin-filepath", "{buffer_path}"]
+        }
+      }
+    }
+  },
+  "file_types": { "HTML": ["gotmpl"] }
+}

README.md

@@ -6,18 +6,20 @@ My personal website. Hosted over at <https://millironx.com>
 
 ## Notes to self
 
-All dependencies are now bundled as a Nix Flake. The only trouble with this is
-that npm packages don't play well with Nix (and especially Flakes), so npm
-packages are specified twice: once in `package{-lock}.json` and then again in
-`node*.nix`.
+### Nix dev shell
+
+All developer dependencies are now bundled as a Nix Flake. The only trouble with
+this is that npm packages don't play well with Nix (and especially Flakes), so
+npm packages are specified twice: once in `package{-lock}.json` and then again
+in `node*.nix`.
 
 Compounding this, there are formatters and commit hooks that require npm to be
 functional. So, to develop right now requires allowing direnv to setup the Nix
 development shell, then immediately installing npm packages via `npm ci`. VSCode
-(with extensions) and Zed are smart enough to figure out how to use direnv, but
-other programs (like SourceGit) not so much, so you'll need to launch those
-programs from inside a direnv shell to make sure they have Prettier, Husky, and
-all that jazz to execute the hooks.
+(with extensions) and Zed are smart enough to figure out how to use direnv, and
+direnv will pass the PATH to SourceGit for Mac, but other programs aren't that
+smart, so you'll need to launch those programs from inside a direnv shell to
+make sure they have Prettier, Husky, and all that jazz to execute the hooks.
 
 Last compounding factors: if `node_modules` is present in the root directory,
 then node2nix won't create a correct derivation, so `node_modules` will need to
@@ -30,3 +32,11 @@ run.
 Yes, hopefully I can get completely away from npm here soon, but this is a minor
 inconvenience considering how (not) often I install new packages into this site,
 and really discourages me from contributing to the website obesity crisis.
+
+### Nix building
+
+Nix building will not work because Hugo reaches out to the internet via content
+adapters, and that (by intention) is not perfectly reproducable. As such,
+_development_ tools are installed in a Nix shell, but building has been removed
+from the Flake. Thankfully, hugomods provides "canonical" Docker images for hugo
+now.

assets/characters/README.md

@@ -0,0 +1,30 @@
+# Characters
+
+Imaginary friends that help me inject personality into my articles. These are
+anthropomorphized versions of animals that I have known in real life. I tried to
+draw them roughly in the style of Chris Pasquini, but failed myself, then tried
+using Perplexity's image generation. The style isn't quite the same, but I like
+it for these animals. Also, Perplexity does a horrible job of labeling images,
+so ignore the ref sheet emotion labels.
+
+## Spawn of Satan (aka Spawn aka SOS)
+
+![Spawn ref sheet](spawn/_ref-body-perplexity.png)
+
+Spawn of Satan is the name Travis gave to the cannulated cow, and it stuck.
+Spawn is old and cynical after having every professor with a new idea experiment
+on her. After being in academia for so long, she knows her way around
+mathematics and the scientific method reasonably well, even if she's never
+formally taken a college course in the sciences. She is the realist to any blog
+post's optimist.
+
+## Whelen
+
+![Whelen ref sheet](whelen/_ref-body-perplexity.png)
+
+Whelen is a happy-go-lucky German Shepherd/Husky mix puppy. He's been to school
+once - and that was just to get neutered - so his knowledge of math and science,
+heck, even of the humanities, isn't very good. He is very naive and thinks
+everyone is nice and wants to be his friend, but he is also friendly to everyone
+and is very vocal when he feels left out. He will step in when any blog post is
+getting too technical and demand an explanation for real people (dogs?).

assets/graphics/fa/bitcoin.svg

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assets/graphics/fa/block-quote.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M448 64H0v64H448V64zm0 160H128v64H448V224zM128 384v64H448V384H128zM64 224H0V448H64V224z"/></svg>

assets/graphics/fa/candy-bar.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 640 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M0 320H128V224H0v96zM0 448H128V352H0v96zm288 0V352H160v96H288zm0-224H160v96H288V224zm0-160H160V192H288V64zm352 0H320V448H640V64zM33.1 192H128l0 0V160h0V97.1C113.6 111.3 93.8 120 72 120c-6.2 0-12.2-.7-18-2c1.3 5.8 2 11.8 2 18c0 21.8-8.7 41.6-22.9 56z"/></svg>

assets/graphics/fa/chevrons-down.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M260.6 278.6L238 301.3l-22.6-22.6-192-192L.7 64 46 18.7 68.6 41.4 238 210.7 407.4 41.4 430 18.7 475.3 64 452.6 86.6l-192 192zm0 192L238 493.3l-22.6-22.6-192-192L.7 256 46 210.7l22.6 22.6L238 402.7 407.4 233.4 430 210.7 475.3 256l-22.6 22.6-192 192z"/></svg>

assets/graphics/fa/circle-info.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M256 512A256 256 0 1 0 256 0a256 256 0 1 0 0 512zM216 336h24V272H216 192V224h24 48 24v24 88h8 24v48H296 216 192V336h24zm72-144H224V128h64v64z"/></svg>

assets/graphics/fa/circle-quarters.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M120.2 391.8L256 256 391.8 391.8C426.5 357 448 309 448 256s-21.5-101-56.2-135.8L256 256 120.2 120.2C85.5 155 64 203 64 256s21.5 101 56.2 135.8zM0 256a256 256 0 1 1 512 0A256 256 0 1 1 0 256z"/></svg>

assets/graphics/fa/code.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 640 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M362.8 8l-9.4 30.6-128 416L216 485.2 277.2 504l9.4-30.6 128-416L424 26.8 362.8 8zm71.9 136l22.6 22.6L546.7 256l-89.4 89.4L434.7 368 480 413.3l22.6-22.6 112-112L637.3 256l-22.6-22.6-112-112L480 98.7 434.7 144zM160 98.7l-22.6 22.6-112 112L2.7 256l22.6 22.6 112 112L160 413.3 205.3 368l-22.6-22.6L93.3 256l89.4-89.4L205.3 144 160 98.7z"/></svg>

assets/graphics/fa/codeberg.svg

@@ -0,0 +1,3 @@
+<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" viewBox="0 0 4.233 4.233">
+    <path d="M0 2.265c0 .398.112.788.323 1.125l1.765-2.281c.013-.016.044-.016.057 0l.737.953h-.528l.011.042h.549l.156.201h-.648l.018.066h.681l.137.177H2.49l.024.085h.81l.122.158h-.888l.029.104h.939l.107.139H2.625l.032.115h1.065l.099.128H2.693l.032.115H3.91c.211-.337.323-.727.323-1.125 0-1.169-.947-2.116-2.117-2.116S0 1.096 0 2.265zm2.761 1.253l.032.115h.939l.091-.115zm.068.243l.032.115h.628l.126-.115zm.067.243l.032.114h.212l.184-.114z" paint-order="markers fill stroke"/>
+</svg>

assets/graphics/fa/ebay.svg

@@ -0,0 +1 @@
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assets/graphics/fa/ethereum.svg

@@ -0,0 +1 @@
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assets/graphics/fa/google-scholar.svg

@@ -0,0 +1 @@
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assets/graphics/fa/hacker-news.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M0 32v448h448V32H0zm21.2 197.2H21c.1-.1.2-.3.3-.4 0 .1 0 .3-.1.4zm218 53.9V384h-31.4V281.3L128 128h37.3c52.5 98.3 49.2 101.2 59.3 125.6 12.3-27 5.8-24.4 60.6-125.6H320l-80.8 155.1z"/></svg>

assets/graphics/fa/lightning.svg

@@ -0,0 +1 @@
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assets/graphics/fa/link.svg

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assets/graphics/fa/lutris.svg

@@ -0,0 +1,65 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   id="svg30"
+   width="256"
+   height="256"
+   version="1.1"
+   viewBox="0 0 256 256"
+   xmlns:xlink="http://www.w3.org/1999/xlink"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:svg="http://www.w3.org/2000/svg">
+  <g
+     id="layer1"
+     transform="matrix(1.1717564,0,0,1.1837458,-307.94823,-494.86516)">
+    <g
+       id="g4532-1"
+       transform="translate(5.8770956,91.426111)">
+      <path
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+         id="path2996-71-2"
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+      <path
+         style="fill:var(--body-background);fill-opacity:1;stroke:none"
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+      <path
+         style="fill:currentcolor;fill-opacity:0.15686275;stroke:none"
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+    </g>
+  </g>
+</svg>

assets/graphics/fa/matrix.svg

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+<svg xmlns="http://www.w3.org/2000/svg" width="1536" height="1792" viewBox="0 0 1536 1792">
+    <path d="M40.467 163.152v1465.696H145.92V1664H0V128h145.92v35.152zm450.757 464.64v74.14h2.069c19.79-28.356 43.717-50.215 71.483-65.575 27.765-15.656 59.963-23.336 96-23.336 34.56 0 66.165 6.795 94.818 20.086 28.652 13.293 50.216 37.22 65.28 70.893 16.246-23.926 38.4-45.194 66.166-63.507 27.766-18.314 60.848-27.472 98.954-27.472 28.948 0 55.828 3.545 80.64 10.635 24.812 7.088 45.785 18.314 63.508 33.968 17.722 15.656 31.31 35.742 41.354 60.85 9.747 25.107 14.768 55.236 14.768 90.683v366.573h-150.35V865.28c0-18.314-.59-35.741-2.068-51.987-1.476-16.247-5.316-30.426-11.52-42.24-6.499-12.112-15.656-21.563-28.062-28.653-12.405-7.088-29.242-10.634-50.214-10.634-21.268 0-38.4 4.135-51.397 12.112-12.997 8.27-23.336 18.608-30.72 31.901-7.386 12.997-12.407 27.765-14.77 44.602-2.363 16.542-3.84 33.379-3.84 50.216v305.133H692.971v-307.2c0-16.247-.294-32.197-1.18-48.149-.591-15.95-3.84-30.424-9.157-44.011-5.317-13.293-14.178-24.223-26.585-32.197-12.406-7.976-30.425-12.112-54.646-12.112-7.088 0-16.542 1.478-28.062 4.726-11.52 3.25-23.04 9.157-33.968 18.02-10.93 8.86-20.383 21.563-28.063 38.103-7.68 16.543-11.52 38.4-11.52 65.28v317.834H349.44V627.792zm1004.309 1001.056V163.152H1390.08V128H1536v1536h-145.92v-35.152z"/>
+</svg>

assets/graphics/fa/monero.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 496 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M352 384h108.4C417 455.9 338.1 504 248 504S79 455.9 35.6 384H144V256.2L248 361l104-105v128zM88 336V128l159.4 159.4L408 128v208h74.8c8.5-25.1 13.2-52 13.2-80C496 119 385 8 248 8S0 119 0 256c0 28 4.6 54.9 13.2 80H88z"/></svg>

assets/graphics/fa/p.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 320 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M64 288h96c53 0 96-43 96-96s-43-96-96-96H64V288zM0 352V320 288 96 64 32H32 64h96c88.4 0 160 71.6 160 160s-71.6 160-160 160H64v96 32H0V448 352z"/></svg>

assets/graphics/fa/right-to-bracket.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M192 96L352 256 192 416l-32 0 0-96L0 320 0 192l160 0 0-96 32 0zM352 416l96 0 0-320-96 0-32 0 0-64 32 0 128 0 32 0 0 32 0 384 0 32-32 0-128 0-32 0 0-64 32 0z"/></svg>

assets/graphics/fa/rss.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M64 32C28.7 32 0 60.7 0 96V416c0 35.3 28.7 64 64 64H384c35.3 0 64-28.7 64-64V96c0-35.3-28.7-64-64-64H64zm32 80c150.2 0 272 121.8 272 272H320c0-123.7-100.3-224-224-224V112zm0 96c97.2 0 176 78.8 176 176H224c0-70.7-57.3-128-128-128V208zm0 144a32 32 0 1 1 64 0 32 32 0 1 1 -64 0z"/></svg>

assets/graphics/fa/scroll.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 576 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M0 80v80H48 96V80c0-26.5-21.5-48-48-48S0 53.5 0 80zM112 32c10 13.4 16 30 16 48V384c0 35.3 28.7 64 64 64s64-28.7 64-64V336 320h16H480V128c0-53-43-96-96-96H112zM464 480c61.9 0 112-50.1 112-112V352H288v32c0 53-43 96-96 96H368h96z"/></svg>

assets/graphics/fa/spotify.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 496 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M248 8C111.1 8 0 119.1 0 256s111.1 248 248 248 248-111.1 248-248S384.9 8 248 8zm100.7 364.9c-4.2 0-6.8-1.3-10.7-3.6-62.4-37.6-135-39.2-206.7-24.5-3.9 1-9 2.6-11.9 2.6-9.7 0-15.8-7.7-15.8-15.8 0-10.3 6.1-15.2 13.6-16.8 81.9-18.1 165.6-16.5 237 26.2 6.1 3.9 9.7 7.4 9.7 16.5s-7.1 15.4-15.2 15.4zm26.9-65.6c-5.2 0-8.7-2.3-12.3-4.2-62.5-37-155.7-51.9-238.6-29.4-4.8 1.3-7.4 2.6-11.9 2.6-10.7 0-19.4-8.7-19.4-19.4s5.2-17.8 15.5-20.7c27.8-7.8 56.2-13.6 97.8-13.6 64.9 0 127.6 16.1 177 45.5 8.1 4.8 11.3 11 11.3 19.7-.1 10.8-8.5 19.5-19.4 19.5zm31-76.2c-5.2 0-8.4-1.3-12.9-3.9-71.2-42.5-198.5-52.7-280.9-29.7-3.6 1-8.1 2.6-12.9 2.6-13.2 0-23.3-10.3-23.3-23.6 0-13.6 8.4-21.3 17.4-23.9 35.2-10.3 74.6-15.2 117.5-15.2 73 0 149.5 15.2 205.4 47.8 7.8 4.5 12.9 10.7 12.9 22.6 0 13.6-11 23.3-23.2 23.3z"/></svg>

assets/graphics/fa/zcash.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M256 512A256 256 0 1 0 256 0a256 256 0 1 0 0 512zm96-352.5l-4.3 6.2L229.8 336H328h24v48H328 184 160V352.5l4.3-6.2L282.2 176H184 160V128h24H328h24v31.5z"/></svg>

assets/graphics/fa/zotero.svg

@@ -0,0 +1,3 @@
+<svg xmlns="http://www.w3.org/2000/svg" width="1536" height="1792" viewBox="0 0 1536 1792">
+    <path d="M662.716 1663.44l667.946-310.051V428.98L662.714 128.5.508 428.98v924.408zm-348.331-279.43v-202.24l24.881-96.325 352.155-378.95H314.385V492.137l59.332-82.295h600.96l62.842 78.47v218.181l-338.44 378.95h275.6l62.841 77.188v221.379z" fill-rule="evenodd" stroke-width="14.41"/>
+</svg>

assets/graphics/millironx-icon.svg

@@ -0,0 +1,51 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+<svg
+  width="512px"
+  height="512px"
+  viewBox="0 0 512 512"
+  id="svg2"
+  version="1.1"
+  xmlns="http://www.w3.org/2000/svg"
+  xmlns:svg="http://www.w3.org/2000/svg"
+>
+  <style>
+    svg {
+      background-color: transparent;
+      color-scheme: light dark;
+    }
+
+    path {
+      stroke: black;
+      fill: none;
+      fill-rule: evenodd;
+      stroke-dasharray: none;
+      stroke-linecap: round;
+      stroke-linejoin: round;
+      stroke-miterlimit: 4;
+      stroke-opacity: 1;
+      stroke-width: 21;
+    }
+
+    g {
+      filter: drop-shadow(7px 7px white);
+    }
+
+    @media (prefers-color-scheme: dark) {
+      path {
+        stroke: white;
+      }
+
+      g {
+        filter: drop-shadow(7px 7px black);
+      }
+    }
+  </style>
+  <g>
+    <path
+      d="M 76.0229 257.139 L 148.925 257.139 C 154.744 257.139 160.688 256.874 166.097 254.728 C 171.506 252.583 176.104 248.69 179.651 244.078 C 183.198 239.465 185.786 234.178 189.279 229.525 C 191.026 227.198 193.032 225.031 195.44 223.398 C 197.848 221.766 200.692 220.688 203.602 220.688 C 206.511 220.688 209.355 221.766 211.763 223.398 C 214.171 225.031 216.177 227.198 217.924 229.525 C 221.417 234.178 224.005 239.465 227.552 244.078 C 231.099 248.69 235.697 252.583 241.106 254.728 C 246.515 256.874 252.459 257.139 258.278 257.139 L 331.181 257.139"
+    />
+    <path d="M 363.075 301.564 L 435.977 210.436" />
+    <path d="M 363.075 210.436 L 435.977 301.564" />
+  </g>
+</svg>

assets/graphics/millironx.svg

@@ -1,43 +1,42 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
 <!-- Created with Inkscape (http://www.inkscape.org/) -->
-
 <svg
-   xmlns:dc="http://purl.org/dc/elements/1.1/"
-   xmlns:cc="http://creativecommons.org/ns#"
-   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-   xmlns:svg="http://www.w3.org/2000/svg"
-   xmlns="http://www.w3.org/2000/svg"
-   width="29.935179mm"
-   height="8.7677584mm"
-   viewBox="0 0 106.06953 31.06686"
-   id="svg2"
-   version="1.1">
-   <defs
-      id="defs4">
-      <style>
-         svg {
-         background-color: transparent;
-         color-scheme: light dark;
-         }
+  width="29.935179mm"
+  height="8.7677584mm"
+  viewBox="0 0 106.06953 31.06686"
+  version="1.1"
+  xmlns="http://www.w3.org/2000/svg"
+  xmlns:svg="http://www.w3.org/2000/svg"
+>
+  <style>
+    svg {
+      background-color: transparent;
+      color-scheme: light dark;
+    }
 
-         path {
-         stroke: light-dark(black, white);
-         }
-      </style>
-   </defs>
-   <g
-      transform="translate(-201.95727,-469.32877)">
-      <path
-         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-         d="m 205,497.3622 h 20 c 1.59641,0 3.22706,-0.0728 4.71101,-0.66135 1.48394,-0.58857 2.74536,-1.65633 3.71836,-2.92194 0.973,-1.26562 1.6829,-2.71578 2.64135,-3.99245 0.47923,-0.63833 1.02956,-1.23277 1.69028,-1.68064 0.66071,-0.44787 1.4408,-0.74362 2.239,-0.74362 0.7982,0 1.57829,0.29575 2.239,0.74362 0.66072,0.44787 1.21105,1.04231 1.69028,1.68064 0.95845,1.27667 1.66835,2.72683 2.64135,3.99245 0.973,1.26561 2.23442,2.33337 3.71836,2.92194 1.48395,0.58857 3.1146,0.66135 4.71101,0.66135 h 20"
-         transform="translate(1.2499871,-12.187492)" />
-      <path
-         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-         d="m 285,497.3622 20,-25"
-      />
-      <path
-         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-         d="m 285,472.3622 20,25"
-      />
-   </g>
+    path {
+      stroke: black;
+      fill: none;
+      fill-rule: evenodd;
+      stroke-dasharray: none;
+      stroke-linecap: round;
+      stroke-linejoin: round;
+      stroke-miterlimit: 4;
+      stroke-opacity: 1;
+      stroke-width: 6;
+    }
+
+    @media (prefers-color-scheme: dark) {
+      path {
+        stroke: white;
+      }
+    }
+  </style>
+  <g>
+    <path
+      d="M 4.29299 15.8457 L 24.293 15.8457 C 25.8894 15.8457 27.52 15.7729 29.004 15.1843 C 30.4879 14.5958 31.7494 13.528 32.7224 12.2624 C 33.6954 10.9968 34.4053 9.54663 35.3637 8.26996 C 35.8429 7.63163 36.3933 7.03719 37.054 6.58932 C 37.7147 6.14145 38.4948 5.8457 39.293 5.8457 C 40.0912 5.8457 40.8713 6.14145 41.532 6.58932 C 42.1927 7.03719 42.743 7.63163 43.2223 8.26996 C 44.1807 9.54663 44.8906 10.9968 45.8636 12.2624 C 46.8366 13.528 48.098 14.5958 49.582 15.1843 C 51.0659 15.7729 52.6966 15.8457 54.293 15.8457 L 74.293 15.8457"
+    />
+    <path d="M 83.043 28.0332 L 103.043 3.0332" />
+    <path d="M 83.043 3.0332 L 103.043 28.0332" />
+  </g>
 </svg>

assets/styles/millironx.css

@@ -165,7 +165,18 @@
   );
   --container-border: light-dark(var(--swiss-brown-6), var(--eclipse-16));
   --container-background: light-dark(var(--swiss-brown-4), var(--eclipse-12));
+  --container-border-alt: light-dark(var(--eclipse-16), var(--swiss-brown-6));
+  --container-background-alt: light-dark(
+    var(--eclipse-12),
+    var(--swiss-brown-4)
+  );
   --motto-background: rgba(0, 0, 0, 0.66);
+  --page-button-text: var(--prickly-pear-yellow-1);
+  --page-button-background: var(--prickly-pear-yellow-8);
+  --page-button-background-hover: var(--prickly-pear-yellow-10);
+  --page-button-background-active: var(--prickly-pear-yellow-12);
+  --page-button-background-disabled: var(--prickly-pear-yellow-6);
+  --page-button-text-disabled: var(--eclipse-7);
 
   /*
     Fonts
@@ -174,7 +185,10 @@
     "URW Bookman L", "Georgia Pro", Georgia, serif;
   --font-family-slab-serif: Rockwell, "Rockwell Nova", "Roboto Slab",
     "DejaVu Serif", "Sitka Small", serif;
+  --font-family-transitional: Charter, "Bitstream Charter", "Sitka Text",
+    Cambria, serif;
   --font-family-system-ui: system-ui, sans-serif;
+  --font-family-monospace: "Nimbus Mono PS", "Courier New", monospace;
 }
 
 /*
@@ -186,6 +200,26 @@ html {
   font-family: var(--font-family-slab-serif);
 }
 
+body {
+  display: flex;
+  flex-direction: column;
+  min-height: 98vh;
+  margin: 0 8px;
+  align-items: center;
+}
+
+.container {
+  max-width: min(60rem, 100vw - 2rem);
+}
+
+.footer-inner {
+  width: min(60rem, 100vw - 2rem);
+  display: flex;
+  justify-content: space-between;
+  align-items: center;
+  flex-shrink: 0;
+}
+
 a {
   color: var(--link-color);
 }
@@ -235,6 +269,39 @@ nav a:hover {
   background-color: var(--nav-button-background-hover);
 }
 
+main {
+  display: flex;
+  flex-direction: column;
+}
+
+article p,
+.character-dialog-text,
+article li {
+  font-family: var(--font-family-transitional);
+  font-size: 1.15rem;
+  text-justify: inter-word;
+  text-align: justify;
+  hyphens: auto;
+}
+
+article > p {
+  text-indent: 2ch;
+  line-height: 1.5em;
+}
+
+article h1 + p,
+article h2 + p,
+article h3 + p,
+article h4 + p,
+article h5 + p,
+article h6 + p {
+  text-indent: 0;
+}
+
+.footnotes p {
+  font-size: smaller;
+}
+
 figure {
   border-color: var(--container-border);
   border-width: 1.5pt;
@@ -244,33 +311,41 @@ figure {
   padding: 1.25pt;
 }
 
-blockquote {
+figure:has(blockquote) {
   background: linear-gradient(
     to right,
     var(--container-border),
     var(--container-background)
   );
-  border-left: 5px solid black;
-  padding: 1px;
-  padding-left: 6px;
+  border: none;
+  border-radius: 0;
+  border-left: 6px solid black;
+  padding: 0.25em 1em;
 }
 
-blockquote small::before {
+figure:has(blockquote) > blockquote {
+  margin: 0;
+}
+
+figure:has(blockquote) > figcaption::before {
   content: "\2014 \00A0";
 }
 
-blockquote small {
+figure:has(blockquote) > figcaption {
+  margin-top: -1em;
+  margin-bottom: 1em;
   font-size: 80%;
 }
 
 footer {
+  display: flex;
+  flex-direction: column;
+  align-items: center;
   background-color: var(--container-background);
   margin: 0 0 -1em -1em;
   width: calc(100% - 1em);
   padding: 0.25em 1.25em;
-  display: flex;
-  justify-content: space-between;
-  align-items: center;
+  font-size: smaller;
 }
 
 form {
@@ -295,6 +370,25 @@ textarea:invalid {
   border-bottom-color: var(--ear-tag-red);
 }
 
+code {
+  font-family: var(--font-family-monospace);
+}
+
+/*
+  abbr element "tooltip" for mobile
+  heavily modified from https://bitsofco.de/making-abbr-work-for-touchscreen-keyboard-mouse/
+*/
+abbr[title]:focus::after {
+  content: attr(title);
+  background-color: #1e1e1e;
+  color: #fff;
+  border-radius: 0.125em;
+  box-shadow: 1px 1px 5px 0 rgba(0, 0, 0, 0.4);
+  font-size: smaller;
+  padding: 0.5em;
+  display: block;
+}
+
 /*
   Container-type helper classes
 */
@@ -304,6 +398,12 @@ textarea:invalid {
   width: 100%;
 }
 
+.motto-wrapper {
+  display: block;
+  flex: 1 0 30vh;
+  margin-bottom: 1em;
+}
+
 .motto {
   position: relative;
   display: grid;
@@ -313,6 +413,7 @@ textarea:invalid {
   font-weight: 600;
   text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
   width: 100%;
+  height: 100%;
   padding: 0 0 0.5em 0;
   border-radius: 0.25rem;
   z-index: 10;
@@ -340,6 +441,7 @@ textarea:invalid {
 
 .motto .motto-inside h1 {
   background-color: var(--motto-background);
+  padding: 0.5rem;
 }
 
 .card {
@@ -351,11 +453,23 @@ textarea:invalid {
   margin: 1rem 0;
   padding: 0.5rem;
   padding-top: 0;
-  position: relative;
   display: flex;
   flex-direction: column;
 }
 
+.card-content {
+  display: flex;
+  flex-direction: column;
+  flex-grow: 1;
+}
+
+.card-header {
+  display: flex;
+  flex-direction: row;
+  justify-content: space-between;
+  flex-grow: 1;
+}
+
 .card-link {
   white-space: nowrap;
   display: inline-flex;
@@ -363,22 +477,26 @@ textarea:invalid {
   align-items: center;
   text-underline-offset: 0.25em;
   backface-visibility: hidden;
-  margin: 0 0.5em;
+  margin: 0.1em 0.25em;
+  padding: 0.33em;
+  padding-right: 0.45em;
+}
+
+.card-body {
+  margin-top: 0.33em;
 }
 
 .category-button {
-  position: absolute;
-  top: 1em;
-  right: 1em;
   display: grid;
+  align-items: center;
+  justify-items: center;
   color: white;
   background-color: var(--ear-tag-red);
   border-radius: 0.5em;
   padding: 1em;
-}
-
-.card-title a h3 {
-  margin-right: 3.5em;
+  margin: 1em;
+  height: 2em;
+  aspect-ratio: 1 / 1;
 }
 
 .card-title > a {
@@ -421,6 +539,118 @@ textarea:invalid {
   fill: currentColor;
 }
 
+.account-bucket {
+  display: grid;
+  grid-template-columns: 3em 1em 1fr;
+  background-color: var(--container-background-alt);
+  padding: 1em 0;
+  border-radius: 0.5em;
+  border-color: var(--container-border-alt);
+  border-style: solid;
+  color: light-dark(white, black);
+  margin: 1em 0;
+  align-items: center;
+}
+
+.account-bucket h3 {
+  align-self: center;
+  writing-mode: sideways-lr;
+}
+
+.account-bucket details {
+  grid-column: 3;
+}
+
+.account-bucket .crypto-list {
+  grid-column: 3;
+  max-width: 100%;
+}
+
+.account-list {
+  display: flex;
+  justify-content: space-between;
+  flex-wrap: wrap;
+  width: calc(100% - 1.5em);
+}
+
+.account-bucket .account-list {
+  grid-column: 3;
+}
+
+.account-list a {
+  font-size: xx-large;
+  text-decoration: none;
+  color: inherit;
+  padding: 0.5em;
+}
+
+.account-list a:hover {
+  background-color: var(--container-background);
+  border-color: var(--container-border);
+  border-width: 2.5px;
+  border-radius: 0.5em;
+  border-style: solid;
+  padding: calc(0.5em - 2.5px);
+}
+
+figcaption .mono {
+  color: light-dark(black, white);
+  overflow-wrap: anywhere;
+}
+
+.crypto-list details {
+  max-width: 100%;
+}
+
+.character-dialog {
+  display: grid;
+  width: calc(100% - 1rem);
+  grid-template-columns: 5rem 1fr;
+  grid-template-rows: auto auto;
+  gap: 1em;
+  margin: 0.5rem;
+}
+
+.character-avatar {
+  display: grid;
+  max-width: 100%;
+  grid-row: 1 / span 2;
+  grid-column: 1;
+  align-self: start;
+  align-items: center;
+  justify-items: center;
+  min-width: 5rem;
+  min-height: 5rem;
+  border-radius: 5rem;
+  align-items: center;
+  border-style: solid;
+  border-color: var(--nav-button-background-hover);
+  background-color: var(--cowhide-2);
+}
+
+.character-avatar > img {
+  max-width: 4rem;
+  max-height: 4rem;
+}
+
+.character-dialog-bubble {
+  display: grid;
+  grid-template-rows: auto auto;
+  align-self: start;
+  border-radius: 0.5em;
+  border-width: 0.2rem;
+  border-color: var(--nav-button-background);
+  border-style: outset;
+  row-gap: 0.5rem;
+  padding: 0.5rem;
+  background-color: var(--container-border);
+  min-height: 5rem;
+}
+
+.character-dialog-title {
+  font-weight: bolder;
+}
+
 /*
   Helper classes
 */
@@ -431,6 +661,9 @@ textarea:invalid {
 .img-fluid {
   max-width: 100%;
   height: auto;
+  display: grid;
+  align-items: center;
+  justify-items: center;
 }
 
 .float-left {
@@ -443,6 +676,68 @@ textarea:invalid {
   max-width: 100%;
 }
 
+.pagination {
+  display: flex;
+  justify-content: center;
+  gap: 0.5em;
+  padding-left: 0;
+}
+
+.pagination li {
+  list-style-type: none;
+  color: var(--nav-button-text);
+}
+
+.pagination li a {
+  color: var(--page-button-text);
+  background-color: var(--page-button-background);
+  border-radius: 0.05rem;
+  border-style: outset;
+  border-width: 0.2rem;
+  border-color: var(--page-button-background);
+  width: 2rem;
+  max-width: 1.8vw;
+  aspect-ratio: 1 / 1;
+  display: flex;
+  justify-content: center;
+  align-items: center;
+  margin: 0.2rem;
+  text-decoration: none;
+  padding: 0 0.2rem;
+  font-family: var(--font-family-system-ui);
+}
+
+.pagination li a:hover {
+  background-color: var(--page-button-background-hover);
+}
+
+.pagination li.active a {
+  background-color: var(--page-button-background-active);
+}
+
+.pagination li.disabled a {
+  cursor: not-allowed;
+  background-color: var(--page-button-background-disabled);
+  color: var(--page-button-text-disabled);
+  border-style: solid;
+}
+
+.mono {
+  font-family: var(--font-family-monospace);
+  font-weight: 600;
+}
+
+.bolder {
+  font-weight: bolder;
+  background-color: rgba(0, 0, 0, 0.33);
+  border-radius: 0.25em;
+}
+
+/* Specific elements */
+#content {
+  flex: 1 0 max-content;
+}
+
 /*
   Desktop screen size adjustments
 */
@@ -480,6 +775,15 @@ textarea:invalid {
     flex-direction: row;
   }
 
+  .person-profile {
+    position: sticky;
+    top: 0;
+    width: 300px;
+    min-width: 20vw;
+    max-width: 30vw;
+    margin-bottom: 5vh;
+  }
+
   /*
     Helper classes
   */
@@ -501,20 +805,19 @@ textarea:invalid {
     margin-right: 1rem;
   }
 
-  .card-header {
+  .card-thumbnail {
     width: 20vw;
     flex-shrink: 0;
   }
 
-  .card-body {
-    margin-left: 1rem;
+  .card-thumbnail:not(
+      :has(~ .card-content > .card-header > .card-title > .dt-published)
+    ) {
+    width: 10vw;
   }
 
-  .bolder {
-    font-weight: bolder;
-    background-color: rgba(0, 0, 0, 0.33);
-    border-radius: 0.25em;
-    padding: 0.25em 0.75em 0.5em 0.33em;
+  .card-content {
+    margin-left: 1rem;
   }
 
   /*
@@ -534,79 +837,3 @@ textarea:invalid {
     clear: both;
   }
 } /* end @media */
-
-@media (prefers-reduced-motion: no-preference) {
-  @supports (animation-timeline: scroll()) and (animation-range: 0 50vh) {
-    @keyframes sticky-header {
-      from {
-        height: 50vh;
-        top: 6rem;
-      }
-
-      to {
-        height: 10vh;
-        top: -1rem;
-      }
-    }
-
-    @keyframes blurry-header {
-      from {
-        filter: blur(0);
-      }
-
-      to {
-        filter: blur(2px);
-      }
-    }
-
-    @keyframes transparent-text-bg {
-      from {
-        background-color: var(--motto-background);
-      }
-      to {
-        background-color: rgba(0, 0, 0, 0);
-      }
-    }
-
-    main,
-    footer {
-      position: relative;
-      top: 55vh;
-    }
-
-    .motto {
-      position: fixed;
-      top: 12rem;
-
-      animation: sticky-header linear forwards;
-      animation-timeline: scroll();
-      animation-range: 0 50vh;
-    }
-
-    .motto::before {
-      filter: blur(12px);
-
-      top: 2rem;
-
-      animation: blurry-header linear forwards;
-      animation-timeline: scroll();
-      animation-range: 0 50vh;
-    }
-
-    .motto-inside h1 {
-      animation: transparent-text-bg linear forwards;
-      animation-timeline: scroll();
-      animation-range: 0 40vh;
-    }
-
-    @media (min-width: 768px) {
-      .motto {
-        width: calc(100% - 8rem);
-      }
-
-      .motto::before {
-        top: 0;
-      }
-    }
-  } /* end @supports */
-} /* end @media */

assets/styles/scrolling-header.css

@@ -0,0 +1,68 @@
+@media (prefers-reduced-motion: no-preference) {
+  @supports (animation-timeline: scroll()) and (animation-range: 0 50vh) {
+    @keyframes sticky-header {
+      from {
+        flex-basis: 30vh;
+      }
+
+      to {
+        flex-basis: 0;
+      }
+    }
+
+    .motto-wrapper {
+      position: sticky;
+      top: 0;
+      z-index: 100;
+
+      animation: sticky-header linear forwards;
+      animation-timeline: scroll();
+      animation-range: 0 30vh;
+
+      contain: content;
+    }
+
+    @keyframes blurry-header {
+      from {
+        filter: blur(0);
+      }
+
+      to {
+        filter: blur(3.5px);
+      }
+    }
+
+    .motto::before {
+      animation: blurry-header linear forwards;
+      animation-timeline: scroll();
+      animation-range: 0 30vh;
+    }
+
+    @keyframes transparent-text-bg {
+      from {
+        background-color: var(--motto-background);
+        text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
+      }
+      to {
+        background-color: rgba(0, 0, 0, 0);
+        text-shadow: 0 0 10px rgba(0, 0, 0, 1);
+      }
+    }
+    .motto-inside h1 {
+      animation: transparent-text-bg linear forwards;
+      animation-timeline: scroll();
+      animation-range: 0 30vh;
+    }
+
+    .motto-inside h1 small {
+      display: block;
+      font-size: calc(1vh + 1vw);
+      line-height: calc(1vh + 1vw);
+    }
+
+    main section {
+      margin: 0 0.25em;
+      contain: content;
+    }
+  } /* end @supports */
+} /* end @media */

config.toml

@@ -1,7 +1,9 @@
 baseURL = "https://millironx.com"
 languageCode = "en-us"
-title = "MillironX"
-paginate = 5
+title = "Milliron X"
+
+[pagination]
+pagerSize = 5
 
 [build]
 writeStats = true
@@ -9,8 +11,47 @@ writeStats = true
 [Params]
 cardImage = "saddles"
 motto = ""
+images = ["saddles.jpg"]
+categories = []
 
 [taxonomies]
 people = "people"
 tag = "tags"
 category = "categories"
+
+[mediaTypes]
+
+[mediaTypes."application/atom+xml"]
+suffixes = ["xml"]
+
+[outputs]
+home = ["atom", "html", "manifest"]
+page = ["html"]
+section = ["html", "atom"]
+term = ["html", "atom"]
+
+[outputFormats]
+
+[outputFormats.atom]
+mediaType = "application/atom+xml"
+baseName = "feed"
+
+[outputFormats.manifest]
+name = "manifest"
+baseName = "manifest"
+mediaType = "application/json"
+notAlternative = "true"
+
+[markup]
+
+[markup.goldmark]
+
+[markup.goldmark.parser]
+
+[markup.goldmark.parser.attribute]
+block = true
+
+[markup.goldmark.renderHooks]
+
+[markup.goldmark.renderHooks.link]
+enableDefault = true

content/_index.md

@@ -1,12 +1,11 @@
 ---
-title: Home
 cardImage: charolette
 cardImageDescription: She almost looks like she's in her native country again.
 motto: <small>My name is Thomas Christensen</small><br />I am Milliron X
 description: The homepage of Thomas A. Christensen II
-layout: _default/list
 menu:
   main:
+    name: Home
     params:
       icon: home
     weight: -1000
@@ -29,58 +28,3 @@ to a sense of withholding, prestige, and power.
 
 Together, these two symbols represent the qualities I strive for in each of my
 works: authenticity, originality, power, depth, and prestige.
-
-## Who am I?
-
-{{< imgproc me-and-lady Resize "768x" "float-right" >}} Image courtesy
-[Guy McCutcheon Photography](https://www.guymccutcheon.com/) {{< /imgproc >}}
-
-I am
-
-- 🧬 A bioinformatician (by profession)
-- 📐 An engineer (by education)
-- 🐂 A rancher (by lifestyle)
-- 🖥️ A techie (self-taught)
-- 🎥 And a filmmaker (at heart)
-
-I've got a soft spot for Brown Swiss dairy cows (just in case you couldn't tell
-by the pictures), and am sometimes called "one of those crazy, Wyoming dairy cow
-people." I love anything to do with cattle or technology, but especially
-anything to do with both of them.
-
-_{{< abbr "Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist" >}}Christian{{< /abbr >}},
-American, Convervative, Pro-gun, Heterosexual - any questions?_
-
-## Where am I?
-
-{{< imgproc wy-in-ks Resize "768x" "float-left" / >}}
-
-I am a Wyomingite sojurning in Kansas. That ought to lead to some interesting
-stories.
-
-Around the web you can find me at (in order of subjective importance)
-
-- {{< fa github >}} GitHub: [@MillironX](https://github.com/MillironX)
-- {{< fa orcid >}} ORDiD:
-  [0000-0003-1219-9320](https://orcid.org/0000-0003-1219-9320)
-- {{< fa gitlab >}} GitLab: [@MillironX](https://gitlab.com/MillironX)
-- {{< fa vimeo >}} Vimeo:
-  [Thomas Christensen II](https://vimeo.com/tchristensenii)
-- {{< fa stack-overflow >}} StackExchange:
-  [Milliron X](https://stackexchange.com/users/4863541/milliron-x)
-- {{< fa steam >}} Steam: [MillironX](https://steamcommunity.com/id/millironx)
-
-This list is intended to verify my identity on other sites. Please do _not_ use
-it as fodder to try and "follow" me on each of these platforms. I stand with
-RMS:
-
-{{< blockquote "Richard Stallman _in_ [If you feel your organization needs a 'presence' in Facebook](https://stallman.org/facebook-presence.html)" >}}
-Facebook is a bad place for a person to be. When people find us on Facebook, we
-lead them away from Facebook and then talk with them elsewhere.
-{{< /blockquote >}}
-
-I typically don't respond to inquiries made on these platforms. Please use
-[my contact form](/contact), instead.
-
-  </div>
-</div>

content/academia/_index.md

@@ -14,13 +14,15 @@ menu:
 fa-thumbnail: university
 ---
 
-> I have spent too long in school and not enough time in the middle of nowhere
->
-> -- Baxter Black, DVM
-
 During my time in academia, I have amassed a few notable accomplishments. Of
 course, as the old saying goes, "if it isn't published, then it never happened,"
-so here is a list of everything that actually happened. Several of these
-articles are also available on
-[my Google Scholar page](https://scholar.google.com/citations?user=gbP4RDgAAAAJ),
-but this is the complete list.
+so here is a list of everything that actually happened.
+
+Academia is not the be-all and end-all of life (contrary to what your professor
+might have told you). I've found the side-effects to be similar to this guy's:
+
+<!-- prettier-ignore-start -->
+> I have spent too long in school and not enough time in the middle of nowhere,
+> and it has inhibited my ability to learn the simple things.
+{author="Baxter Black, DVM"}
+<!-- prettier-ignore-end -->

content/academia/bpv-genetics.md

@@ -0,0 +1,42 @@
+---
+title: "Genetic analysis of bovine papillomas"
+date: 2024-09-19
+categories:
+  - poster
+people:
+  - Thomas A. Christensen II
+  - Rachel Palinski
+  - Bob Gentry
+journal:
+  "National Association of Animal Breeders Technical Conference Student Poster
+  session"
+location: "Middleton, Wisconsin"
+---
+
+Bovine papillomavirus (BPV) is a major cause of reproductive failure in cattle.
+In bulls, penile papillomas caused by BPV may cause reluctance to breed, and is
+always a cause to fail an animal on a breeding soundness exam. Historically, it
+has been thought that BPV was transmitted via direct contact and could be
+controlled by managing clinically presenting animals in the herd, but more
+recent evidence suggests alternative modes of transmission. BPV has been found
+repeatably in clinically healthy animals, and in non-cutaneous secretions
+including milk, blood, urine and semen. Currently, no commercially available BPV
+vaccine uses isolated viral particles and naturally occurring virus does not
+produce cross-protective immunity. In order to develop a proper vaccine for
+penile papillomas further studies are required to understand the epidemiology of
+BPV in herds. While vulvar, cutaneous, and mammary papillomas have been
+genotyped in recent years, this information is not available for penile
+papillomas. In this study there were 31 submissions, collected from 7 states,
+NE, KS, NY, TX, AL, MO and SD (14 different cattle operations) Samples were
+collected between August of 2022 and April 2024. Twenty-two submissions were
+penile papillomas and with pooling of samples represented over 50 penile
+papillomas. Samples were metagenomically sequenced at the Kansas State
+Veterinary Diagnostic Lab, and the genotype of each sample was determined using
+the phylogenetic analysis. The clade of each sample was determined by aligning
+consensus sequences of the L1 gene (used for both for phylogeny and as a vaccine
+target) using MAFFT and a maximum-likelihood phylogeny generated in Mega X.
+Analysis found that all penile papilloma submissions were composed of BPV type
+2, with one sample showing co-infection with BPV type 1. Conversely, cutaneous
+and teat papillomas had BPV genotypes that were more variable with genotypes of
+1,2,7,12,14,29 and 40. These results indicate that BPV type 2 and type 1 provide
+a unified target for bovine penile papilloma vaccine development.

content/academia/got-warts-naab.md

@@ -0,0 +1,14 @@
+---
+title:
+  "Got Warts? Bovine Papillomavirus Pathogenesis, Transmission, and Vaccination"
+date: 2024-09-19
+featured: false
+categories:
+  - presentation
+people:
+  - Bob Gentry
+  - Thomas A. Christensen II
+journal:
+  "National Association of Animal Breeders Technical Conference Sponsor session"
+location: "Middleton, Wisconsin"
+---

content/academia/taxprofiler.md

@@ -1,6 +1,7 @@
 ---
 title:
-  "nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling"
+  "nf-core/taxprofiler: highly parallelised and flexible pipeline for
+  metagenomic taxonomic classification and profiling"
 date: 2023-10-23
 featured: true
 tags:
@@ -16,9 +17,25 @@ people:
   - Maxime Borry
   - Mahwash Jamy
   - nf-core community
-  - James A. Fellows Yate
+  - James A. Fellows Yates
 link: https://doi.org/10.1101/2023.10.20.563221
 journal: bioRxiv
 ---
 
-Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.
+Metagenomic classification tackles the problem of characterising the taxonomic
+source of all DNA sequencing reads in a sample. A common approach to address the
+differences and biases between the many different taxonomic classification tools
+is to run metagenomic data through multiple classification tools and databases.
+This, however, is a very time-consuming task when performed manually -
+particularly when combined with the appropriate preprocessing of sequencing
+reads before the classification. Here we present nf-core/taxprofiler, a highly
+parallelised read-processing and taxonomic classification pipeline. It is
+designed for the automated and simultaneous classification and/or profiling of
+both short- and long-read metagenomic sequencing libraries against a 11
+taxonomic classifiers and profilers as well as databases within a single
+pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the
+pipeline benefits from high levels of scalability and portability, accommodating
+from small to extremely large projects on a wide range of computing
+infrastructure. It has been developed following best-practise software
+development practises and community support to ensure longevity and adaptability
+of the pipeline, to help keep it up to date with the field of metagenomics.

content/academia/yavsap/index.md

@@ -0,0 +1,54 @@
+---
+title: "YAVSAP: versatile viral quasispecies analysis for veterinary samples"
+date: 2024-03-05
+featured: false
+categories:
+  - presentation
+people:
+  - Thomas A. Christensen II
+  - Steven Stancic
+  - Andrea Lu
+  - Dana Mitzel
+  - William Wilson
+  - Rachel Palinski
+journal: "Phi Zeta Research Day"
+location: "Manhattan, Kansas"
+tags:
+  - virus
+  - quasispecies
+  - next-generation sequencing
+  - pipeline
+awards:
+  - "2nd Place Large Animal Applied Research Presentation"
+link: "/academia/yavsap/yavsap.pdf"
+---
+
+Viral populations within an infected host are composed of viral particles with a
+spectrum of genetic mutations rather than a unified genome. This phenomenon is
+referred to as viral "quasispecies," and has been useful for the understanding
+of viral transmission and early detection of new viral variants. Next generation
+sequencing (NGS) has enabled the study of these quasispecies for many viral
+species, notably Influenza A and B, Human Immunodeficiency Virus (HIV), Foot and
+Mouth Disease Virus (FMDV), and Severe Acute Respiratory Syndrome Coronavirus 2
+(SARS CoV2), and established protocols and computer analysis tools have been
+developed for these species. Some of the most important viruses, such as
+emerging and exotic disease agents, however, do not have replicatable protocols
+or software tools capable of producing valid output from their sequence data.
+Here, we present Yet Another Viral Subspecies Analysis Pipeline (YAVSAP). YAVSAP
+is a fully automated bioinformatic pipeline built from the ground up to identify
+and analyze viral quasispecies of any arbitrary virus in human and veterinary
+samples. YAVSAP provides reference-based genome mapping of both long- and
+short-read sequencing reads to any reference genome that the user chooses,
+identifies subconsensus variants and haplotypes, and assesses the phylogenies of
+all viral sequences found within a sample. YAVSAP is written in Nextflow and
+conforms to the nf-core initiative's standards, which allows it to run on
+low-end computers, high performance computing (HPC) clusters, or anything in
+between with zero configuration. YAVSAP has been tested on viruses of interest
+to veterinary medicine and public health, including Japanese Encephalitis Virus
+(JEV), Influenza D Virus (IDV), Bovine Coronavirus (BCoV), SARS CoV2, and Rift
+Valley Fever Virus (RVFV), and can correctly identify consensus genomes and
+quasispecies within samples containing each of these viruses. This tool provides
+a means for biologists with little bioinformatic experience to analyze deep
+sequence data while correcting for many of the pitfalls associated with previous
+and current analysis platforms. YAVSAP is open source software and is publicly
+available at https://github.com/ksumngs/yavsap.

content/blogroll/_index.md

@@ -1,5 +1,15 @@
 ---
-draft: true
+title: "Blogroll"
+menu:
+  main:
+    name: Blogroll
+    params:
+      icon: scroll
+    weight: -800
+cardImage: eclipse
+cardImageDescription: |
+  Randall Monroe was right. Eclipses are way cooler than they sound.
+suppressRss: true
 ---
 
 ## Stuff I like on the internet
@@ -7,39 +17,4 @@ draft: true
 This section of a website used to be called a "blogroll." I don't know what it's
 called now. In order to be on this list, I must have been subscribed or
 otherwise follow it for over a year. It's amazing how little stuff on the
-internet can't make that cut.
-
-### [Thru the Bible](https://ttb.org/)
-
-I'm convinced that the word of God is timeless, and we need less commentary and
-cherry-picking of favorite verses, and more study of the complete Bible. Dr.
-McGee does just that.
-
-### [Enoch the Cow Vet](https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw)
-
-A veterinarian/agricultural channel that doesn't make me cringe. "God built
-these things for cows for vets ... [there are] so many aspects of the cow that
-are just designed for vets." Amen, Enoch. Amen.
-
-### [Proglogion](https://blog.drwile.com/)
-
-The blog of my high school science teacher (of sorts). It is refreshing to find
-a creationist who can still think critically. I love his "bad sermon
-illustrations" posts.
-
-### [The Milk Check](https://www.jacoby.com/learning-center/podcasts-overview/)
-
-A pragmatic inside look at dairy marketing. I only understand half of what
-they're talking about, but I learn something new every episode.
-
-### [Brian Harry's Blog](https://devblogs.microsoft.com/bharry/)
-
-Where else are you going to find a blog about cows _and_ version control? The
-blog is basically dead now, but it's still fun to go back and read the farm
-stories.
-
-### [Car Talk](https://cartalk.com/)
-
-The antics of these guys are enough to make anyone have to pull over to the side
-of the road from laughing too much. I dread the day when NPR fully axes the only
-good program to cross their airwaves.
+internet can make that cut.

content/blogroll/brian-harry/index.md

@@ -0,0 +1,8 @@
+---
+title: Brian Harry's blog
+link: https://devblogs.microsoft.com/bharry/
+---
+
+Where else are you going to find a blog about cows _and_ version control? The
+blog is basically dead now, but it's still fun to go back and read the farm
+stories.

content/blogroll/car-talk/index.md

@@ -0,0 +1,8 @@
+---
+title: Car Talk
+link: https://cartalk.com
+---
+
+The antics of these guys are enough to make anyone have to pull over to the side
+of the road from laughing too much. I dread the day when NPR fully axes the only
+good program to cross their airwaves.

content/blogroll/enoch-the-cow-vet/index.md

@@ -0,0 +1,8 @@
+---
+title: Enoch the Cow Vet
+link: https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw
+---
+
+A veterinarian/agricultural channel that doesn't make me cringe. "God built
+these things for cows for vets ... [there are] so many aspects of the cow that
+are just designed for vets." Amen, Enoch. Amen.

content/blogroll/proslogion/index.md

@@ -0,0 +1,8 @@
+---
+title: Proslogion
+link: https://blog.drwile.com
+---
+
+The blog of my high school science teacher (of sorts). It is refreshing to find
+a creationist who can still think critically. I love his "bad sermon
+illustrations" posts.

content/blogroll/thru-the-bible/index.md

@@ -0,0 +1,8 @@
+---
+title: Thru the Bible
+link: https://ttb.org
+---
+
+I'm convinced that the word of God is timeless, and we need less commentary and
+cherry-picking of favorite verses, and more study of the complete Bible. Dr.
+McGee does just that.

content/code/_content.gotmpl

@@ -0,0 +1,75 @@
+{{ $data := dict }}
+{{ $url := "https://code.millironx.com/api/v1/users/millironx/repos" }}
+{{ with try (resources.GetRemote $url) }}
+  {{ with .Err }}
+    {{ errorf "Unable to get remote resource %s: %s" $url . }}
+  {{ else with .Value }}
+    {{ $data = . | transform.Unmarshal }}
+  {{ end }}
+{{ else }}
+  {{ errorf "Unable to get remote resource %s" $url }}
+{{ end }}
+
+{{ range $data }}
+  {{/* Get tags of this repository. To quote Steve Edstrom, "If it doesn't have a
+    tag, it doesn't count."
+  */}}
+  {{ $tagUrl := print "https://code.millironx.com/api/v1/repos/millironx/" .name "/tags" }}
+  {{ $tagData := dict }}
+  {{ with try (resources.GetRemote $tagUrl) }}
+    {{ with .Err }}
+      {{ errorf "Unable to get remote resource %s: %s" $tagUrl . }}
+    {{ else with .Value }}
+      {{ $tagData = . | transform.Unmarshal }}
+    {{ end }}
+  {{ else }}
+    {{ errorf "Unable to get remote resource %s" $tagUrl }}
+  {{ end }}
+
+  {{ $firstTag := index $tagData 0 }}
+
+  {{ if $firstTag }}
+    {{ $dates := dict "date" (time.AsTime $firstTag.commit.created) }}
+
+    {{ $content := dict "mediaType" "text/markdown" "value" .description }}
+    {{ $categories := slice "code" }}
+    {{ $people := slice "Thomas A. Christensen II" }}
+    {{ $link := .html_url }}
+    {{ $featured := (gt .stars_count 0) }}
+    {{ $tags := .topics }}
+    {{ $params := dict
+      "categories" $categories
+      "people" $people
+      "link" $link
+      "featured" $featured
+      "tags" $tags
+    }}
+    {{ $page := dict
+      "content" $content
+      "dates" $dates
+      "title" .name
+      "path" .name
+      "params" $params
+    }}
+    {{ $.AddPage $page }}
+
+    {{ $item := . }}
+    {{ with $url := $item.avatar_url }}
+      {{ with resources.GetRemote $url }}
+        {{ with .Err }}
+          {{ errorf "Unable to get remote resource %s: %s" $url . }}
+        {{ else }}
+          {{ $content := dict "mediaType" .MediaType.Type "value" .Content }}
+          {{ $resource := dict
+            "content" $content
+            "path" (print $item.name "/thumbnail." .MediaType.SubType)
+          }}
+          {{ $.AddResource $resource }}
+        {{ end }}
+      {{ else }}
+        {{ errorf "Unable to get remote resource %s" $url }}
+      {{ end }}
+    {{ end }}
+  {{ end }}
+
+{{ end }}

content/code/_index.md

@@ -0,0 +1,14 @@
+---
+title: Coding projects
+menu:
+  main:
+    name: Code
+    params:
+      icon: code
+      link: https://code.millironx.com
+    weight: 50
+fa-thumbnail: code
+link: https://code.millironx.com
+---
+
+A Forgejo instance dedicated to cows and technology

content/contact/_index.html

@@ -15,12 +15,21 @@ menu:
     weight: 1
 fa-thumbnail: file-signature
 validation: true
+suppressRss: true
 ---
 
+<script src="https://js.hcaptcha.com/1/api.js" async defer></script>
+
 <form action="https://usebasin.com/f/787df7bfd22e" method="post">
   <fieldset>
     <legend>Contact Me</legend>
-    <input type="hidden" name="_gotcha" />
+    <input
+      type="hidden"
+      class="form-control"
+      id="honorific"
+      name="honorific"
+      placeholder="Dr."
+    />
     <label for="name">Name</label>
     <input
       type="text"
@@ -65,6 +74,13 @@ validation: true
       required
       style="min-height: 72pt;"
     ></textarea>
+
+    <!-- hCAPTCHA widget -->
+    <div
+      class="form-control h-captcha"
+      data-sitekey="7fe715a1-151f-4c63-b497-bd971974df05"
+    ></div>
+
     <button type="reset" class="btn btn-default">Cancel</button>
     <button type="submit" class="btn btn-primary pageclip-form__submit">
       <span>Submit</span>

content/login/index.md

@@ -0,0 +1,14 @@
+---
+title: Login
+menu:
+  main:
+    name: Login
+    params:
+      icon: right-to-bracket
+      link: https://youtu.be/dQw4w9WgXcQ
+    weight: 99
+fa-thumbnail: right-to-bracket
+link: https://youtu.be/dQw4w9WgXcQ
+---
+
+The password is "Open sesame!"

content/people/thomas-a.-christensen-ii/_index.md

@@ -0,0 +1,113 @@
+---
+title: "Thomas A. Christensen II"
+menu:
+  main:
+    name: About
+    params:
+      icon: circle-info
+      me: true
+    weight: -900
+homepage: https://millironx.com
+accounts:
+  google-scholar: gbP4RDgAAAAJ
+  github: MillironX
+  hacker-news: millironx
+  matrix: "@millironx:matrix.org"
+  orcid: 0000-0003-1219-9320
+  steam: millironx
+  vimeo: tchristensenii
+gpg_key:
+  fingerprint: 8B12 8295 5A14 9FAB 735F  56D3 AD91 52EB 09C8 4352
+  public_key: |
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+    APU7TUwdw8yA55fUC6XqwtlQ2khyIiq/TBExZ4oFkbUF
+    =hbg7
+    -----END PGP PUBLIC KEY BLOCK-----
+crypto:
+  bitcoin: bc1q66u7fqmptr4sczfmvxxfckzl6566633umx40n7
+  lightning: "millironx@coinos.io"
+  ethereum: 0x97610b550a5eB6eB2c4a57d3D2b317816c413Fb4
+  monero: 4649mFt2BVjC8pYD7K5kKzSgbWseoL9r3d6eQJ6nebwnLTe6jQKwB9g3jXkwiXAu1aizir8Uf2TYwAM5sQ4Ggp5434p7fzb
+  zcash: zs13kw2rkljxj6uymx6nnk2npamn2dhafuljfq79ntv67320jaxshnw49h7prrjj5v0pr5ry44c3ml
+---
+
+Hi! I'm Thomas. I love anything to do with cattle or technology, but especially
+anything to do with both of them. I spend way more time in beef country with
+beef cows, but I've got a soft spot for Brown Swiss dairy cows (just in case you
+couldn't tell by the pictures). I've worn a lot of different hats:
+
+|                    |                                                                                                                                                                                                                                                                                                                                                  |
+| ------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
+| First and foremost | ✝️ {{< abbr "Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist" >}}Christian{{< /abbr >}}                                                                                                                                                                                                           |
+| Location           | 🦬 {{< abbr "I want to keep claiming Wyoming, but they're pretty strict about residency there, and I don't want to repeat the  Liz Cheney fishing license incident" >}}Wyomingite{{< /abbr >}} sojourning in 🌻 {{< abbr "Yes, Toto, we are in Kansas now" >}}Kansas{{< /abbr >}} (this ought to be interesting)                                 |
+| Education          | 📐 {{< abbr "noun. A person who cannot build cool things like airplanes or bridges, but can blow up an entire neighborhood and kill dozens of children by misplacing a decimal point. See also: self-hating chemist" >}}Chemical Engineer{{< /abbr >}}                                                                                           |
+| Profession         | 🧬 {{< abbr "I do genetics and computers" >}}Bioinformatician{{< /abbr >}} and 🐄🩺 {{< abbr "I can't rope well enough to be a cowboy, so being a cow doctor will have to suffice" >}}Veterinarian{{< /abbr >}} (soon!)                                                                                                                          |
+| Politics           | 🗽 {{< abbr "Refers to the belief in natural social and political laws created by God that are as inflexible as the laws of physics" >}}Juris naturalist{{< /abbr >}}                                                                                                                                                                            |
+| Hobbies            | 🎥 {{< abbr "Storytelling at 24 frames per second" >}}Filmmaker{{< /abbr >}} and 💃🏻 {{< abbr "Square dancing is more musically rigid and is standardized across the country. Swing dancing is more freeform and differs regionally. It's like the difference between classical music and jazz. I like both." >}}Square/swing dancer{{< /abbr >}} |

content/posts/_index.md

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+---
+title: "ChemE Cows"
+cardImage: stable-diffusion-cheme-cow-08
+cardImageDescription: |
+  black and white dairy cow wearing a bright yellow hard hat at an oil refinery on a clear sunny day
+  Fooocus v2.5.5 realisticStockPhoto_v20.safetensors
+  Hopefully someday I can replace this with a real image
+motto:
+  ChemE Cows<br /><small>A blog about cattle, technology, or anything remotely
+  affecting either of them</small>
+menu:
+  main:
+    name: Blog
+    params:
+      icon: block-quote
+    weight: 2
+fa-thumbnail: block-quote
+---
+
+A blog where I might post stuff some day.

content/posts/baptist-mafia.md

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+---
+title:
+  "On Baptist habits (or why Baptist churches feel like they're run by the
+  Mafia)"
+date: 2024-03-01
+people:
+  - Thomas A. Christensen II
+draft: true
+tags:
+  - religion
+  - baptist
+  - christianity
+  - love
+  - doctrine
+featured: true
+categories:
+  - blog
+---
+
+<!--
+  This is not a real blog post - this is just an idea for a provocative article
+  that I fed into Llama3.2 to generate some text that is slightly more
+  interesting than lorem ipsum. Gee howdy, is this writing crap, but I have
+  committed it to the repository so I can rebase around it. If you are here
+  reading this somehow, please understand that these are not my thoughts.
+-->
+
+In the grand tapestry of American religiosity, there exists a peculiar breed of
+Christian denomination that stands out for its unique blend of fervent devotion
+and...let's be honest, a hint of authoritarianism. I'm, of course, referring to
+Baptist churches. Yes, those churches that make you wonder if they're being run
+by the Mafia.
+
+Now, before I proceed, let me just clarify that this isn't an attempt to
+disparage the good people who worship in these esteemed institutions. No, no,
+nothing like that. It's merely a case of observational reporting, where I'm
+poking around the fringes of Baptist culture to get a better understanding of
+what makes them tick.
+
+As someone who's spent considerable time within the fold (hello, 20+ years of
+being born again), I've come to realize that there are certain habits,
+practices, and attitudes that seem endemic to Baptist churches. Now, keep in
+mind that this isn't a generalization, but rather an observation born out of
+personal experience.
+
+One of these habits is an extraordinary level of fervor and zealotry. Baptists
+tend to be deeply invested in their faith, often to the point where it borders
+on fanaticism. I've seen folks who will passionately argue for or against just
+about anything that's perceived as contrary to their interpretation of
+scripture. Now, while this can be a laudable trait in moderation, excessive
+fervor can quickly turn toxic.
+
+Another peculiar habit of Baptist churches is an unsettling preoccupation with
+hierarchy and authority. It's not uncommon to see senior pastors wielding near
+absolute power within the church, often based on factors such as age,
+experience, or – heaven forbid – personal popularity. This can lead to a culture
+where dissenting voices are stifled, and nonconformity is discouraged.
+
+The worship services themselves often feel more like formal lectures or
+performances than genuinely communal gatherings. Don't get me wrong; I love a
+good hymn or sermon as much as the next person, but sometimes it feels like
+you're trapped in a 90-minute lecture on theology. And if you're sitting too far
+forward, forget about trying to contribute to the conversation – your
+participation will be met with stern disapproval.
+
+In addition, there's an omnipresent air of suspicion and mistrust that seems to
+pervade every aspect of Baptist life. If someone doesn't toe the party line,
+they're often met with swift reprimand or outright ostracism. This creates a
+toxic environment where people feel pressured into conformity rather than being
+encouraged to explore their own spirituality.
+
+Of course, there are always exceptions to the rule, just like in any other human
+endeavor. I've encountered Baptist churches that embody the very opposite of
+these described habits – places where worship is genuine, inclusive, and
+welcoming, where individual freedom and creativity are cherished, and where the
+emphasis is on community rather than control.
+
+So what drives this peculiar breed of authoritarianism within some Baptist
+churches? Is it a genuine misunderstanding of scripture, or perhaps a result of
+historical context? Or is there something deeper at play – perhaps an inherent
+tension between the democratic values of American society and the hierarchical
+structures of traditional Christianity?
+
+These questions are central to my exploration of this topic. I'll delve into the
+complexities of Baptist history, the role of patriarchal ideology, and the ways
+in which cultural and social factors have shaped the institution over time.
+
+In conclusion, while I'm not ready to declare war on all things Baptist just yet
+(although, I must admit, it's tempting), I do hope that this exploration will
+shed some light on a fascinating aspect of American religiosity. Perhaps,
+through a better understanding of these peculiar habits and practices, we can
+foster a more inclusive and compassionate community – one where faith and
+conviction are tempered by empathy and respect for differing viewpoints.
+
+Ultimately, as someone who's found their own spiritual home within the Baptist
+fold, I believe it's essential to approach this conversation with sensitivity,
+curiosity, and an open mind. By embracing our shared humanity rather than
+perpetuating artificial divisions, we can work towards creating a more vibrant
+tapestry of faith in America – one that celebrates diversity while remaining
+committed to core principles of love and service.
+
+But for now, I'll leave you with these final thoughts on Baptist habits – habits
+that may seem baffling or even disturbing at times, but are ultimately part of
+what makes the Baptist experience so richly textured.

content/posts/history-of-medicine.md

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+---
+title: "A Brief History of Medicine (2438)"
+date: 2024-05-01
+people:
+  - Thomas A. Christensen II
+draft: true
+tags:
+  - medicine
+  - technology
+  - fiction
+  - epidemiology
+  - veterinary medicine
+featured: true
+categories:
+  - blog
+---
+
+<!--
+  This is not a real blog post - this is just an idea for a provocative article
+  that I fed into Llama3.2 to generate some text that is slightly more
+  interesting than lorem ipsum. Gee howdy, is this writing crap, but I have
+  committed it to the repository so I can rebase around it. If you are here
+  reading this somehow, please understand that these are not my thoughts.
+-->
+
+I still remember the first time I set foot in the hospital where I would spend
+most of my working life. It was 2123, and medicine was already a highly advanced
+field, thanks to the rapid progress made possible by nanotechnology and
+artificial intelligence. The patient I was assigned to that day was an elderly
+man who had been suffering from a rare genetic disorder for years. With the help
+of a swarm of microscopic robots that could repair damaged cells at a molecular
+level, we were able to extend his lifespan by several decades.
+
+As a young physician, it was exhilarating to be part of a field that seemed to
+have no limits. We were constantly pushing the boundaries of what was thought
+possible, and it showed in our results. Patients who would have been doomed
+years ago were now thriving, thanks to advances in medicine.
+
+But as with any rapidly advancing field, there were also risks involved. The use
+of nanorobots and AI algorithms raised concerns about accountability and
+transparency. As a physician, I had to be careful to ensure that my actions were
+guided by the highest ethical standards.
+
+The years that followed were marked by incredible breakthroughs in medicine.
+Diseases that had plagued humanity for centuries began to disappear as
+treatments became more effective. Cancer, in particular, was a major target for
+researchers, and significant progress was made in understanding its causes and
+developing targeted therapies.
+
+One of the most exciting developments in this area was the discovery of a new
+type of cancer-killing nanobot that could selectively target and destroy tumor
+cells while leaving healthy tissue intact. The technology was still in its
+infancy, but the potential it held was enormous.
+
+As I look back on those early years of my career, I am reminded of the
+importance of perseverance and creativity. Medicine is a field that requires
+constant innovation and adaptation, and it takes a lot of hard work to stay
+ahead of the curve.
+
+Over time, medicine evolved to become an integral part of daily life. People
+began to live longer, healthier lives, thanks to advances in preventative care
+and personalized medicine. The rise of genomics and precision medicine allowed
+for tailored treatments that could be customized to individual needs.
+
+As a physician, I had the privilege of witnessing firsthand the impact that
+these advancements had on people's lives. Patients who would have been confined
+to beds for years were now able to return to their normal activities, thanks to
+the latest treatments.
+
+But with all the progress we made, there were also new challenges that emerged.
+The increasing reliance on technology led to concerns about the ethics of
+medicine. As medical robots and AI algorithms took over more tasks, there were
+questions about accountability and the role of human physicians in this new
+landscape.
+
+These debates are ongoing to this day. As a physician, it's essential for me to
+stay up-to-date with the latest developments and advancements in my field. By
+doing so, I can ensure that patients receive the best possible care, while also
+navigating the complex issues surrounding medicine in the 24th century.
+
+Fast forward to 2438, and medicine has changed dramatically. Diseases have
+become a rarity, thanks to breakthroughs in biotechnology and genetic
+engineering. Humans live longer, healthier lives, with an average lifespan of
+over 120 years.
+
+Despite these advancements, there are still challenges to overcome. The
+increasing reliance on AI and biotechnology has raised concerns about the ethics
+of medicine. Many people worry that as medical robots and algorithms take over
+more tasks, human physicians will become obsolete.
+
+However, I firmly believe that this is a misconception. As a physician in 2438,
+I can attest that being a doctor still requires a deep understanding of human
+biology, psychology, and sociology. While technology has certainly advanced
+medicine, there are also skills and qualities that cannot be replicated by
+machines alone.
+
+One of the most critical aspects of being a doctor is empathy. As a human being,
+you need to understand your patients' emotional states, their fears and
+anxieties, in order to provide them with effective care. This is something that
+AI systems struggle to replicate, no matter how advanced they become.
+
+In my practice, I see patients who have been diagnosed with conditions that were
+previously considered incurable. Cancer, for example, has all but disappeared
+thanks to targeted therapies and immunotherapies. However, there are still other
+challenges to overcome.
+
+As a physician, it's essential to stay informed about the latest developments in
+medicine. This includes understanding how new technologies can be used to
+improve patient outcomes, as well as addressing any concerns or fears that
+patients may have regarding these advancements.
+
+One of the most significant breakthroughs in recent years has been the
+development of advanced bioprinting techniques. These allow for the creation of
+complex tissue structures and organs, which can then be transplanted into
+patients who require them.
+
+The potential applications for this technology are vast. It could revolutionize
+organ transplantation, allowing for more efficient use of donor organs and
+reducing the need for long-term immunosuppression treatments.
+
+However, there are also concerns about the ethics of bioprinting. As with any
+new technology, there are questions about accountability, safety, and the role
+of human physicians in this process.
+
+Despite these challenges, I remain optimistic about the future of medicine. As a
+physician in 2438, I've seen firsthand the incredible progress that has been
+made, and I'm excited to see what the next generation of medical breakthroughs
+will bring.
+
+One area of particular interest is the development of new treatments for mental
+health disorders. In my practice, I often encounter patients who struggle with
+anxiety, depression, or post-traumatic stress disorder (PTSD). These conditions
+are complex and multifaceted, and it's essential to develop treatments that
+address all aspects of their impact.
+
+Recently, there has been a significant breakthrough in the development of new
+therapies for mental health disorders. A team of researchers has made
+significant progress in understanding the underlying mechanisms of these
+conditions, and this has led to the development of new treatments that are more
+effective than anything that came before.
+
+The treatment is based on the idea that mental health disorders are not just
+symptoms, but rather a manifestation of an imbalance in the body's natural
+chemistry. By developing targeted therapies that address this imbalance,
+researchers have been able to create medications that can effectively treat a
+wide range of conditions.
+
+One of the most promising developments in this area is the use of
+neurotransmitter modulators. These are small molecules that can be used to
+regulate the balance of neurotransmitters in the brain, which play a critical
+role in regulating mood and emotional states.
+
+The implications for mental health treatment are enormous. For the first time in
+history, we have a class of medications that could potentially treat multiple
+conditions at once. This is a game-changer for patients who suffer from complex
+mental health disorders, and it's a testament to the power of medical research.
+
+As I look back on my career as a physician, I am reminded of the importance of
+perseverance and creativity. Medicine is a field that requires constant
+innovation and adaptation, and it takes a lot of hard work to stay ahead of the
+curve.
+
+Despite all the progress we've made, there are still challenges to overcome. The
+increasing reliance on technology raises concerns about accountability and
+transparency, as well as questions about the role of human physicians in this
+new landscape.
+
+These debates will likely continue for years to come. As a physician, it's
+essential for me to stay informed about the latest developments in medicine,
+while also addressing any concerns or fears that patients may have regarding
+these advancements.
+
+Ultimately, my goal is to provide the best possible care to my patients, while
+also pushing the boundaries of what's thought possible in this field. As a
+doctor in 2438, I am excited to see what the future holds for medicine, and I am
+confident that we will continue to make tremendous progress in the years ahead.
+
+}}