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9 commits

Author SHA1 Message Date
36a12042d4
chore: Update website to match GitHub version 2024-03-28 21:21:46 -05:00
b3e465be2f Update '.domains' 2024-03-26 03:43:00 +00:00
ea152f2a3e Update '.domains' 2024-03-26 03:28:59 +00:00
3c95ac1a02 Update '.domains' 2024-03-26 03:25:45 +00:00
d90b320452 Add '.domains' 2024-03-26 03:09:21 +00:00
fbdb8e38aa Delete '.domains' 2024-03-26 02:41:48 +00:00
298f88bbfb Add '.domains' 2024-03-26 02:26:11 +00:00
MillironX
f2c2499279 deploy: b2f77179d6 2023-01-03 05:06:56 +00:00
d46d71ba71 Build and deploy 2022-10-24 16:20:17 +00:00
313 changed files with 7594 additions and 4629 deletions

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.domains Normal file
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millironx.com
www.millironx.com
millironx.pages.millironx.com
pages.millironx.pages.millironx.com
pages.pages.millironx.pages.millironx.com

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.envrc
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use nix
layout node

1
.gitattributes vendored
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assets/scripts/pro-duotone-svg-icons/** filter=git-crypt diff=git-crypt

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# Sample workflow for building and deploying a Hugo site to GitHub Pages
name: Deploy Hugo site to Pages
on:
# Runs on pushes targeting the default branch
push:
branches: ["master"]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
contents: read
pages: write
id-token: write
# Allow one concurrent deployment
concurrency:
group: "pages"
cancel-in-progress: true
# Default to bash
defaults:
run:
shell: bash
jobs:
# Build job
build:
runs-on: ubuntu-latest
env:
HUGO_VERSION: 0.111.3
NODE_VERSION: 18.14.2
steps:
- name: Checkout
uses: actions/checkout@v3
with:
submodules: recursive
fetch-depth: 0
- name: Install git-crypt
run: |
sudo apt-get install git-crypt -y
- name: Decrypt repository
run: |
echo "${{ secrets.GIT_CRYPT_KEY }}" \
| base64 --decode \
> ~/millironx.github.io.key
git-crypt unlock ~/millironx.github.io.key
- name: Install Node.js
uses: actions/setup-node@v3
with:
node-version: "${{ env.NODE_VERSION }}"
- name: Install Hugo CLI
uses: peaceiris/actions-hugo@v2
with:
hugo-version: "${{ env.HUGO_VERSION }}"
extended: true
- name: Setup Pages
id: pages
uses: actions/configure-pages@v2
- name: Install postcss cli
run: npm install -g postcss-cli
- name: Install Node.js dependencies
run: npm ci
- name: Build with Hugo
env:
# For maximum backward compatibility with Hugo modules
HUGO_ENVIRONMENT: production
HUGO_ENV: production
run: |
hugo \
--minify \
--baseURL "${{ steps.pages.outputs.base_url }}/"
- name: Upload artifact
uses: actions/upload-pages-artifact@v1
with:
path: ./public
# Deployment job
deploy:
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
runs-on: ubuntu-latest
needs: build
steps:
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v1

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.gitignore vendored
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### Jekyll gitignore ###
_site/
.sass-cache/
.jekyll-cache/
.jekyll-metadata
### Hugo gitignore ###
# Generated files by hugo
/public/
/resources/_gen/
/assets/jsconfig.json
hugo_stats.json
# Executable may be added to repository
hugo.exe
hugo.darwin
hugo.linux
# Temporary lock file while building
/.hugo_build.lock
### Node gitignore ###
# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
lerna-debug.log*
.pnpm-debug.log*
# Diagnostic reports (https://nodejs.org/api/report.html)
report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
# Runtime data
pids
*.pid
*.seed
*.pid.lock
# Directory for instrumented libs generated by jscoverage/JSCover
lib-cov
# Coverage directory used by tools like istanbul
coverage
*.lcov
# nyc test coverage
.nyc_output
# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
.grunt
# Bower dependency directory (https://bower.io/)
bower_components
# node-waf configuration
.lock-wscript
# Compiled binary addons (https://nodejs.org/api/addons.html)
build/Release
# Dependency directories
node_modules/
jspm_packages/
# Snowpack dependency directory (https://snowpack.dev/)
web_modules/
# TypeScript cache
*.tsbuildinfo
# Optional npm cache directory
.npm
# Optional eslint cache
.eslintcache
# Optional stylelint cache
.stylelintcache
# Microbundle cache
.rpt2_cache/
.rts2_cache_cjs/
.rts2_cache_es/
.rts2_cache_umd/
# Optional REPL history
.node_repl_history
# Output of 'npm pack'
*.tgz
# Yarn Integrity file
.yarn-integrity
# dotenv environment variable files
.env
.env.development.local
.env.test.local
.env.production.local
.env.local
# parcel-bundler cache (https://parceljs.org/)
.cache
.parcel-cache
# Next.js build output
.next
out
# Nuxt.js build / generate output
.nuxt
dist
# Gatsby files
.cache/
# Comment in the public line in if your project uses Gatsby and not Next.js
# https://nextjs.org/blog/next-9-1#public-directory-support
# public
# vuepress build output
.vuepress/dist
# vuepress v2.x temp and cache directory
.temp
.cache
# Docusaurus cache and generated files
.docusaurus
# Serverless directories
.serverless/
# FuseBox cache
.fusebox/
# DynamoDB Local files
.dynamodb/
# TernJS port file
.tern-port
# Stores VSCode versions used for testing VSCode extensions
.vscode-test
# yarn v2
.yarn/cache
.yarn/unplugged
.yarn/build-state.yml
.yarn/install-state.gz
.pnp.*

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# List the start up tasks. Learn more https://www.gitpod.io/docs/config-start-tasks/
tasks:
- name: Install Hugo dependencies
before: brew install hugo
init: echo "Your version of Hugo is `hugo version`"
command: npm ci && hugo server -D -F --baseUrl $(gp url 1313) --liveReloadPort=443 --appendPort=false --bind=0.0.0.0
# List the ports to expose. Learn more https://www.gitpod.io/docs/config-ports/
ports:
- port: 1313
onOpen: open-preview

1
.husky/.gitignore vendored
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_

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#!/bin/sh
. "$(dirname "$0")/_/husky.sh"
npx lint-staged

0
.nojekyll Normal file
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node_modules
themes

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"$schema": "http://json.schemastore.org/prettierrc"
proseWrap: always
overrides:
- files: "*.html"
options:
parser: "go-template"

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when:
branch: "master"
steps:
- name: Decrypt repository
image: truemark/git-crypt:beta-0.7.0-alpine-3.17
commands:
- echo "${GIT_CRYPT_KEY}" | base64 --decode > ./.git-crypt-key
- git-crypt unlock ./.git-crypt-key
- rm ./.git-crypt-key
secrets:
- git_crypt_key
- name: Install Node packages
image: node:18.14.2-slim
commands:
- npm ci
- name: Build Hugo site
image: peaceiris/hugo:v0.111.3-full
environment:
HUGO_ENV: production
HUGO_ENVIRONMENT: production
commands:
- hugo --minify
- name: Deploy to pages
image: codeberg.org/xfix/plugin-codeberg-pages-deploy:1
settings:
folder: public
ssh_key:
from_secret: ssh_key

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21
LICENSE
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MIT License
Copyright (c) 2021 Thomas A. Christensen II
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.

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# millironx.github.io
My personal website. Now hosted over at https://millironx.com

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Wyoming Honors Program: Laramie, Wyoming</h5><h2>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h2><h3><small><ul class=list-inline></ul></small></h3><h4>May 14, 2019</h4><p>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture
and mining by utilizing rumen fluid from a cannulated beef cow to generate
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop.
The concentration of cesium-137 source is measured using the radioactive decay
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the
current power source and stopping mechanism.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.15786/13700938.v1>https://doi.org/10.15786/13700938.v1</a>
<iframe src=https://doi.org/10.15786/13700938.v1 style=width:100%;height:75vh></iframe></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://code.millironx.com/ data-bs-toggle=tooltip title="Code (Gitea)"><i class="fax fa-gitea fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://nextcloud.millironx.com/ data-bs-toggle=tooltip title="Files (Nextcloud)"><i class="fax fa-nextcloud fa-fw"></i></a>
<button type=button class="btn btn-outline-primary btn-sm" data-bs-toggle=modal data-bs-target=#extras-modal title=Extras>
<i class="fad fa-cowbell fa-fw"></i></button></div></div></div></div></footer></main></div></div><script src=/js/fontawesome.min.js></script>
<script src=/js/jquery-bundle.js></script>
<script src=/js/bootstrap-bundle.js></script>
<script src=/scripts/masonry/masonry.pkgd.min.js></script>
<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
<a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io/src/branch/master/LICENSE><i class="fad fa-scale-balanced"></i>&emsp;MIT Licensed &#187;</a></p><p>In addition, I used a number of excellent open-source libraries
and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
site uses <a href=https://goatcounter.com>GoatCounter</a>, a
privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>cannulated-cows</dd><dt>categories</dt><dd>[thesis]</dd><dt>date</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>University of Wyoming Honors Program</dd><dt>lastmod</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.15786/13700938.v1</dd><dt>location</dt><dd>Laramie, Wyoming</dd><dt>people</dt><dd>[Thomas A. Christensen II]</dd><dt>publishdate</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[chemical engineering AIChE radiation rumen microbial electrolysis cells]</dd><dt>title</dt><dd>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>How to Build a Cow-Cud Fuel Cell - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>How to Build a Cow-Cud Fuel Cell</h2><h3><small><ul class=list-inline></ul></small></h3><h4>August 1, 2018</h4></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<a class="btn btn-outline-primary btn-sm" href=https://nextcloud.millironx.com/ data-bs-toggle=tooltip title="Files (Nextcloud)"><i class="fax fa-nextcloud fa-fw"></i></a>
<button type=button class="btn btn-outline-primary btn-sm" data-bs-toggle=modal data-bs-target=#extras-modal title=Extras>
<i class="fad fa-cowbell fa-fw"></i></button></div></div></div></div></footer></main></div></div><script src=/js/fontawesome.min.js></script>
<script src=/js/jquery-bundle.js></script>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>ACS ES&amp;T Engineering</h5><h2>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h2><h3><small><ul class=list-inline></ul></small></h3><h4>September 2, 2022</h4><p>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be
hindered by high contaminant concentrations and acids generated during
remediation. Encapsulating microbes in hydrogels may provide a protective,
tunable environment from inhibiting compounds; however, current approaches to
formulate successful encapsulated systems rely on trial and error rather than
engineering approaches because fundamental information on mass-transfer
coefficients is lacking. To address this knowledge gap, hydronium ion
mass-transfer rates through two commonly used hydrogel materials, poly(vinyl
alcohol) and alginic acid, under two solidification methods (chemical and
cryogenic) were measured. Variations in hydrogel crosslinking conditions,
polymer composition, and solvent ionic strength were investigated to understand
how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that
the ionic strength, membrane type, and crosslinking method significantly (<em>p</em> &lt;
0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion
diffusion increased with ionic strength, counter to what is observed in
aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to
increased hydronium ion diffusion with ionic strength included an increased
water fraction within hydrogel matrices and hydrogel contraction. Measured
diffusion rates determined in this study provide first principal design
information to further optimize encapsulating hydrogels for bioremediation.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1021/acsestengg.2c00107>https://doi.org/10.1021/acsestengg.2c00107</a>
<iframe src=https://doi.org/10.1021/acsestengg.2c00107 style=width:100%;height:75vh></iframe></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation&#8221; by
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>categories</dt><dd>[paper]</dd><dt>date</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>false</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>ACS ES&amp;T Engineering</dd><dt>lastmod</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.1021/acsestengg.2c00107</dd><dt>people</dt><dd>[Carson J. Silsby Jonathan R. Counts Thomas A. Christensen II Mark F. Roll Kristopher V. Waynant James G. Moberly]</dd><dt>publishdate</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[diffusion hydrogels ionic strength polymers transport properties]</dd><dt>title</dt><dd>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Academic Publications and Presentations - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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course, as the old saying goes, &ldquo;if it isn&rsquo;t published, then it never happened,&rdquo;
so here is a list of everything that actually happened. Several of these
articles are also available on
<a href="https://scholar.google.com/citations?user=gbP4RDgAAAAJ">my Google Scholar page</a>,
but this is the complete list.</p></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2><h3 class=card-title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h3></a><div>07 Aug 2020</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve the challenges posed by free proton generation during remediation of trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In this thesis, the challenges posed by systems that contain both diffusion and reaction processes for protons are considered mathematically, and a computer simulation to was developed to prove the relationship between diaphragm cell lag period and reactive capabilities of membranes.
<strong><small><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/academia/cheme-car/thumbnail_hua27ceb9f6c1a8b01057b70de792ffbc6_1566619_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=https://doi.org/10.15786/13700938.v1><h3 class=card-title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h3></a><div>14 May 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the current power source and stopping mechanism.
<strong><small><a href=https://doi.org/10.15786/13700938.v1>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a>
<a href=/tags/aiche/ class="icon-link card-link"><i class="fad fa-tag"></i> AIChE</a>
<a href=/tags/radiation/ class="icon-link card-link"><i class="fad fa-tag"></i> radiation</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a>
<a href=/tags/microbial-electrolysis-cells/ class="icon-link card-link"><i class="fad fa-tag"></i> microbial electrolysis cells</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/presentation/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Presentation><i class="fad fa-podium fa-fw"></i></a></div><div class=card-body><a href=/academia/how-to-build-a-cow-cud-fuel-cell/><h3 class=card-title>How to Build a Cow-Cud Fuel Cell</h3></a><div>01 Aug 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text><strong><small><a href=/academia/how-to-build-a-cow-cud-fuel-cell/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Westion Section American Society of Animal Science Annual Meeting: Boise, Idaho</h5><h2>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h2><h3><small><ul class=list-inline></ul></small></h3><h4>June 12, 2019</h4><p>Early colonization of the rumen microbiome is critical to host health and long
term performance. Factors that influence early colonization include maternal
factors such as gestational nutrition and mode of delivery. Therefore, we
hypothesized that late gestational nutrition and mode of delivery would
influence the calf rumen microbiome. Our objectives were to determine if
nutrient restriction during late gestation alters the calf rumen microbiome and
determine if ruminal microbiome composition differs in calves born vaginally
versus caesarean. Late gestating Angus cows were randomly allocated to one of
three treatment groups: control (<strong>CON</strong>; n = 6), caesarean section (<strong>CS</strong>; n =
4), and nutrient restricted (<strong>NR</strong>; n = 5), where CON were fed DDGS and hay to
meet NRC requirements and calved naturally; CS were fed similarly to CON and
calves were born via caesarean section; and NR were fed at a level to reduce BCS
by 1.5-2.0 points over the last trimester compared to CON and calved naturally.
Rumen fluid was collected via oral lavage prior to partition from cows and at d
7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic
shotgun sequencing was performed using the Illumina HiSeq 2500 platform.
Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by
QIIME1 and QIIME2 to determine differential abundance and alpha- and
beta-diversity differences. There were no significant differences in
alpha-diversity as measured by shannon index across treatment groups for cows
(<em>P</em> = 0.239), but there were significant differences for calves (<em>P</em> = 0.015).
Similarly, there were no significant differences in beta-diversity as measured
by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but there were
significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em>
&lt; 0.001) between cows and calves, with cows having increased species richness
compared to calves. Beta-diversity also differed (<em>P</em> = 0.001) between cows and
calves. At total of 410 taxa were differentially abundant (<em>P</em> &lt; 0.01) between
cows and calves. These results suggest that the mature rumen microbiome of cows
is able to withstand changes in feed intake, however the calf microbiome is
susceptible to alteration by maternal factors. These data also suggest that
there may be opportunities to develop management strategies during late
gestation that influence calf health and performance long-term.</p><div class="card border-dark m-3 p-3"><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf</a>
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Thomas A. Christensen II is licensed under a
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>awards</dt><dd>[1st Place Undergraduate Poster Competition]</dd><dt>cardimage</dt><dd>cannulated-cows</dd><dt>categories</dt><dd>[poster]</dd><dt>date</dt><dd>2019-06-12 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>Westion Section American Society of Animal Science Annual Meeting</dd><dt>lastmod</dt><dd>2019-06-12 00:00:00 +0000 UTC</dd><dt>link</dt><dd>/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf</dd><dt>location</dt><dd>Boise, Idaho</dd><dt>people</dt><dd>[Thomas A. Christensen II Kathy J. Austin Kristi M. Cammack Hannah C. Cunningham-Hollinger]</dd><dt>publishdate</dt><dd>2019-06-12 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[gestation metagenomics microbiome rumen]</dd><dt>title</dt><dd>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>AIChE Annual Meeting: Pittsburgh, Pennsylvania</h5><h2>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h2><h3><small><ul class=list-inline></ul></small></h3><h4>October 29, 2018</h4><p>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique
challenges for cleanup because of its water solubility, density, and volatility.
Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE
results in acid generation that inhibits remediating microorganisms. Calcium
alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting
remediating microbes, however diffusion of TCE or its byproducts through these
polymers is unknown. To measure the effective diffusion coefficient of TCE and
byproducts through hydrogel membranes, we used a modified diaphragm cell.
Measured effective diffusion coefficient of each species was (cm <sup>2</sup>
/s
× 10<sup>6</sup>
): 14.0 ± 1.91 for H<sup>+</sup>
ions, 12.4 ± 1.64 for TCE,
7.83 ± 0.54 for cis-1,2-dichloroethylene (DCE), and 4.68 ± 4.14 for vinyl
chloride. These results aid in engineering biobeads and suggest that CA-PVA
hydrogel blends are effective in slowing diffusion of protons, buffering acids
produced by trichloroethylene metabolism, and remains suitable for encapsulation
of microorganisms involved in bioremediation.</p><div class="card border-dark m-3 p-3"><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf</a>
<iframe src=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf style=width:100%;height:75vh></iframe></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
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acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>awards</dt><dd>[3rd Place Environmental III Division Undergraduate Poster Competition]</dd><dt>cardimage</dt><dd>library</dd><dt>categories</dt><dd>[poster]</dd><dt>date</dt><dd>2018-10-29 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>false</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>AIChE Annual Meeting</dd><dt>lastmod</dt><dd>2018-10-29 00:00:00 +0000 UTC</dd><dt>link</dt><dd>/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf</dd><dt>location</dt><dd>Pittsburgh, Pennsylvania</dd><dt>people</dt><dd>[Thomas A. Christensen II Samuel R. Wolfe Jonathan Counts Mark F. Roll Kristopher V. Waynant James G. Moberly]</dd><dt>publishdate</dt><dd>2018-10-29 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[bioremediation polyoxometalate hydrogel polymers proton transport chemical engineering]</dd><dt>title</dt><dd>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</dd></dl></div></div></div></div></div></div></body></html>

View file

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring diffusion of protons in polyvinyalginate - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>Measuring diffusion of protons in polyvinyalginate</h2><h3><small><ul class=list-inline></ul></small></h3><h4>July 31, 2018</h4><p>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents
unique challenges for cleanup because of its density and volatility. Use of
microorganisms may be a promising remediation method, however metabolism of TCE
results in acid buildup, which consequently impedes the ability of
microorganisms to perform this remediation. Polyvinylalginate (PVA) shows
promise as a useful shield for microorganisms carrying out bioremediation of TCE
by surrounding them in a protective biofilm-like layer, however, key information
is missing which relates diffusion of TCE or its metabolic products through PVA.
To measure the effective diffusion coefficient of H<sup>+</sup>
ions through
a PVA membrane cross-linked with boric acid and calcium ions, we used a modified
diaphragm cell. We found the effective diffusion coefficient to be 1.40 ×
10<sup>-5</sup>
± 1.91 × 10<sup>-6</sup>
cm<sup>2</sup>
s, a nearly
seven-fold decrease in diffusivity compared to protons in water, with an
unexpected significant but as of yet unquantified adsorption capacity. These
results suggest that polyvinylalginate is effective in slowing diffusion of
protons and buffering these acids produced by trichloroethylene metabolism, and
remains suitable for encapsulation of microorganisms involved in bioremediation.</p></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Veterinary Microbiology</h5><h2>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h2><h3><small><ul class=list-inline></ul></small></h3><h4>April 27, 2022</h4><p>Enteric disease is the predominant cause of morbidity and mortality in young
mammals including pigs. Viral species involved in porcine enteric disease
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
and pestiviruses among others. The virome of three groups of swine samples
submitted to the Kansas State University Veterinary Diagnostic Laboratory for
routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a
Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group. All
groups were designated by qRT-PCR results testing for Porcine Rotavirus A, B, C
and H such that samples positive for RVA only went in the RVA group, samples
positive for >1 rotavirus went in the RV group and samples negative for all were
grouped in the RVNeg group. All of the animals had clinical enteric disease
resulting in scours and swollen joints/lameness, enlarged heart and/or a cough.
All samples were metagenomic sequenced and analyzed for viral species
composition that identified 14 viral species and eight bacterial viruses/phages.
Sapovirus and Escherichia coli phages were found at a high prevalence in RVA and
RV samples but were found at low or no prevalence in the RV Neg samples.
Picobirnavirus was identified at a high proportion and prevalence in RV Neg and
RV samples but at a low prevalence in the RVA group. A sequence analysis of the
possible host of Picobirnaviruses revealed fungi as the most likely host.
Non-rotaviral diversity was highest in RVA samples followed by RV then RV Neg
samples. Various sequences were extracted from the sample reads and a
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
genotypes. These data are important for pathogen surveillance and control
measures</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1016/j.vetmic.2022.109447>https://doi.org/10.1016/j.vetmic.2022.109447</a>
<iframe src=https://doi.org/10.1016/j.vetmic.2022.109447 style=width:100%;height:75vh></iframe></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease&#8221; by
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>cannulated-cows</dd><dt>categories</dt><dd>[paper]</dd><dt>date</dt><dd>2022-04-27 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>Veterinary Microbiology</dd><dt>lastmod</dt><dd>2022-04-27 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.1016/j.vetmic.2022.109447</dd><dt>people</dt><dd>[Tyler Doerksen Thomas A. Christensen II Andrea Lu Lance Noll Jianfa Bai Jamie Henningson Rachel Palinski]</dd><dt>publishdate</dt><dd>2022-04-27 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[porcine rotavirus porcine enteric disease virome rotavirus]</dd><dt>title</dt><dd>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>bioRxiv</h5><h2>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h2><h3><small><ul class=list-inline></ul></small></h3><h4>October 23, 2023</h4><p>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1101/2023.10.20.563221>https://doi.org/10.1101/2023.10.20.563221</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Idaho: Moscow, Idaho</h5><h2>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h2><h3><small><ul class=list-inline></ul></small></h3><h4>August 7, 2020</h4><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
the challenges posed by free proton generation during remediation of
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
this thesis, the challenges posed by systems that contain both diffusion and
reaction processes for protons are considered mathematically, and a computer
simulation to was developed to prove the relationship between diaphragm cell lag
period and reactive capabilities of membranes. Two polyoxometalate compounds,
sodium decavanadate and alumina sulfate, were successfully incorporated into a
poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
with each compound was determined. It was found that the diffusivity of protons
through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
10<sup>-5</sup>
cm<sup>2</sup>
s<sup>-1</sup>
, the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 ×
10<sup>-6</sup>
cm<sup>2</sup>
s<sup>-1</sup>
, and the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/alumina sulfate membrane was 3.32 ×
10<sup>-7</sup>
cm<sup>2</sup>
s<sup>-1</sup>
. Through analysis of the
diaphragm cell lag period, it was found the incorporation of sodium decavanadate
did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
incorporation of alumina sulfate lowered the reactivity. These results indicate
that polyoxometalate integration into hydrogel membranes is feasible, but does
not provide any advantage to a bioremediation scenario.</p><div class="card border-dark m-3 p-3"><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2</a>
<iframe src=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2 style=width:100%;height:75vh></iframe></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers&#8221; by
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><meta name=description content="Advertising page to try and sell my artificial insemination services"><title>Artificial Insemination - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Artificial Insemination</h1></div><div class=img-src style=background-image:url(/images/Ai-calf.jpg)></div><div class="img-src blur" style=background-image:url(/images/Ai-calf_hu1143faa57f5b1acd11a97eda612b56ee_469394_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><section itemscope itemtype=http://schema.org/Product><h2 itemprop=name>Cattle artificial insemination services</h2><p>I am licensed in the Great State of Wyoming as a food animal artificial
insemination technician. I only offer AI services for cows, even though
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depending on the time of year.</p><h3>Rate schedule</h3><div itemprop=offers itemscope itemtype=http://schema.org/Offer><table itemprop=priceSpecification itemscope itemtype=http://schema.org/CompoundPriceSpecification class="table table-responsive table-striped"><meta itemprop=price content="25.00"><meta itemprop=priceCurrency content="USD"><tr itemprop=priceComponent itemscope itemtype=http://schema.org/UnitPriceSpecification><th>Insemination</th><td><small>(per cow)</small></td><td><span itemprop=priceCurrency content="USD">$</span><span itemprop=price>25.00</span></td><td><small>5 cow minimum charge</small></td></tr><tr itemprop=priceComponent itemscope itemtype=http://schema.org/UnitPriceSpecification><th>Milage</th><td><small>(per mile, one-way)</small></td><td><span itemprop=priceCurrency content="USD">$</span><span itemprop=price>1.05</span></td><td><small>2.5 mile minimum charge</small></td></tr></table></div><p>I will provide all equipment <strong>except</strong> semen storage (liquid
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style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:14.14374161px;font-family:Garamond;-inkscape-font-specification:'Garamond Bold'">MILLIRON X</tspan></text>
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import { library, icon, config, dom } from "@fortawesome/fontawesome-svg-core";
import {
faBook,
faBrowser,
faComment,
faCowbell,
faEllipsis,
faFileAlt,
faFileSignature,
faGlobe,
faGraduationCap,
faHome,
faNotebook,
faPodium,
faPresentation,
faTag,
faScaleBalanced,
faUniversity,
faUser,
faUserAstronaut,
faVideo,
faW,
} from "./pro-duotone-svg-icons/index.mjs";
import {
faDiscord,
faGithub,
faGitlab,
faGolang,
faHtml5,
faOrcid,
faStackOverflow,
faSteam,
faVimeo,
} from "@fortawesome/free-brands-svg-icons";
config.familyDefault = "duotone";
config.styleDefault = "duotone";
const faBullSperm = {
prefix: "fax",
iconName: "bull-sperm",
icon: [
512,
512,
[],
null,
"M96 32c-6.691.363-12.375 4.062-15.375 7.062l-64 64c-12.8 12.8-5.333 26.667 0 32l96 64c10.3 10.301 22.938 4.887 37.563-7.812 8.635 9.735 16.63 18.38 23.125 24.875 8.33 8.33 23.436 16.284 41.75 24.313 18.313 8.028 39.82 16.065 60.812 24.062 20.992 7.997 41.474 15.986 57.625 23.938 16.15 7.95 27.882 16.013 31.5 23.25 6.52 13.038 26.468 44.939 48.875 79.75 22.32 34.674 46.99 72.043 63 96.062.02.029.042.096.064.125.045.064.144.185.189.25l2.812-1.5c-10.685-26.697-28.285-68.26-46.44-106.437-18.155-38.179-36.666-72.792-49.937-86.063-16.566-16.566-56.5-32.375-96.5-48.375s-80.066-32.19-95.5-47.625c-6.45-6.45-14.409-15.11-23.063-24.875 12.926-14.779 18.51-27.552 8.125-37.938-16-26.666-51.2-83.2-64-96-5.6-5.6-11.42-7.345-16.625-7.062zm372.688 436.75c.201.487.488 1.079.687 1.563-.291-.44-.644-.995-.937-1.438.023-.012.06.001.064 0 .002 0 .185-.06.188-.064.002-.001-.011-.038 0-.064z",
],
};
const faPeertube = {
prefix: "fax",
iconName: "peertube",
icon: [
512,
512,
[],
null,
"M55.8 25V255L255 140zM255 140v230l199.2-115zM55.8 255v230L255 370z",
],
};
const faGitea = {
prefix: "fax",
iconName: "gitea",
icon: [
512,
512,
[],
null,
"M92.7 114.5c-5.2 0-11 .4-17.6 1.9c-7 1.4-26.8 5.9-43 21.5C-3.9 169.9 5.3 221 6.4 228.6c1.4 9.4 5.5 35.4 25.4 58c36.6 44.9 115.5 43.8 115.5 43.8s9.7 23.1 24.5 44.4c20 26.5 40.6 47.1 60.6 49.6c50.4 0 151.1-.1 151.1-.1s9.6 .1 22.6-8.2c11.2-6.8 21.2-18.7 21.2-18.7s10.3-11 24.7-36.2c4.4-7.8 8.1-15.3 11.3-22.4c0 0 44.2-93.7 44.2-184.9c-.9-27.6-7.7-32.5-9.3-34.1c-3.3-3.3-7.7-3.2-7.7-3.2s-93.8 5.3-142.3 6.4c-10.6 .2-21.2 .5-31.7 .6l0 93.8c-4.4-2.1-8.9-4.2-13.3-6.3c0-29.1-.1-87.4-.1-87.4c-23.2 .3-71.4-1.8-71.4-1.8s-113.1-5.7-125.4-6.8c-3.9-.2-8.4-.7-13.6-.7zm9.8 38.4s5.7 47.5 12.6 75.4c5.8 23.4 19.8 62.2 19.8 62.2s-20.9-2.5-34.4-7.3c-20.7-6.8-29.5-15-29.5-15s-15.3-10.7-23-31.8c-13.2-35.4-1.1-57-1.1-57s6.7-18 30.8-24c11-3 24.8-2.5 24.8-2.5zm171 53.5c5.9-.4 11.9 2.6 11.9 2.6l18.2 8.8c-3.7 7.5-7.4 15-11.1 22.5c-5.4-.1-10.3 2.8-12.9 7.5c-2.7 5-2.2 11.3 1.5 15.8l-19.7 40.3c-6.6 .1-12.3 4.6-13.8 11s1.6 13 7.3 16c6.2 3.2 14 1.4 18.2-4.3c4.1-5.7 3.4-13.5-1.4-18.5L290.8 269c1.2 .1 3 .2 5-.4c3.3-.7 5.7-2.9 5.7-2.9c3.4 1.4 6.9 3 10.6 4.9c3.8 1.9 7.4 3.9 10.7 5.8c.7 .4 1.4 .9 2.2 1.5c1.3 1 2.7 2.5 3.8 4.4c1.5 4.4-1.5 11.9-1.5 11.9c-1.8 6.1-14.7 32.5-14.7 32.5c-6.5-.2-12.2 4-14.2 10c-2.1 6.5 .9 13.8 7.1 17s13.9 1.4 18-4.2c4-5.4 3.7-13-.9-18.1c1.5-3 3-5.9 4.5-9c4-8.3 10.8-24.3 10.8-24.3c.7-1.4 4.6-8.2 2.2-17c-2-9.1-10.1-13.4-10.1-13.4c-9.8-6.3-23.4-12.2-23.4-12.2s0-3.3-.9-5.7c-.9-2.5-2.2-4.1-3.1-5c3.6-7.4 7.2-14.8 10.8-22.2L373.9 252s10.1 4.6 12.2 13c1.5 5.9-.4 11.2-1.4 13.8c-5 12.3-44 90.5-44 90.5s-4.9 11.6-15.7 12.3c-4.6 .3-8.2-1-8.2-1s-.2-.1-4.2-1.7l-90.3-44s-8.7-4.6-10.2-12.5c-1.8-6.5 2.2-14.5 2.2-14.5l43.4-89.5s3.8-7.8 9.8-10.4c.5-.2 1.8-.8 3.6-1.2c.8-.2 1.6-.3 2.5-.4z",
],
};
const faNextcloud = {
prefix: "fax",
iconName: "nextcloud",
icon: [
733,
512,
[],
null,
"m365.6 114.3c-65 0-120.1 44.1-137.2 103.8c-14.8-31.7-47-53.8-84-53.8c-50.9 0-92.8 41.9-92.8 92.8s41.9 92.8 92.8 92.8c37 0 69.2-22.2 84-53.9c17.1 59.7 72.2 103.8 137.2 103.8c64.5 0 119.3-43.4 136.8-102.4c15.1 31 46.9 52.5 83.4 52.5c50.9 0 92.8-41.9 92.8-92.8s-41.9-92.8-92.8-92.8c-36.5 0-68.3 21.6-83.4 52.5c-17.1-59-71.9-102.4-136.4-102.4zm0 54.5c49.1 0 88.3 39.2 88.3 88.2s-39.2 88.3-88.3 88.3s-88.2-39.2-88.2-88.3s39.2-88.2 88.2-88.2zm-221.2 49.9c21.5 0 38.3 16.8 38.3 38.3s-16.9 38.3-38.3 38.3s-38.3-16.9-38.3-38.3s16.8-38.3 38.3-38.3zm441.4 0c21.5 0 38.3 16.8 38.3 38.3s-16.9 38.3-38.3 38.3s-38.3-16.9-38.3-38.3s16.8-38.3 38.3-38.3z",
],
};
library.add(
faBook,
faBrowser,
faBullSperm,
faComment,
faCowbell,
faDiscord,
faEllipsis,
faFileAlt,
faFileSignature,
faGitea,
faGithub,
faGitlab,
faGlobe,
faGolang,
faGraduationCap,
faHome,
faHtml5,
faNextcloud,
faNotebook,
faOrcid,
faPeertube,
faPodium,
faPresentation,
faTag,
faScaleBalanced,
faStackOverflow,
faSteam,
faUniversity,
faUser,
faUserAstronaut,
faVideo,
faVimeo,
faW
);
dom.i2svg();

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$("#phone").mask("(000) 000-0000");

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$(window).scroll(function (e) {
oVal = $(window).scrollTop() / 170;
$(".blur").css("opacity", oVal);
});
$("#motto").fitText();

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var tooltipTriggerList = [].slice.call(
document.querySelectorAll('[data-bs-toggle="tooltip"]')
);
var tooltipList = tooltipTriggerList.map(function (tooltipTriggerEl) {
return new bootstrap.Tooltip(tooltipTriggerEl);
});

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@ -1,183 +0,0 @@
$web-font-path: "/fonts/nunito-sans/index.css";
@import "bootstrap/functions";
@import "bootswatch/lux/variables";
@import "bootstrap/bootstrap";
@import "bootswatch/lux/bootswatch";
$peek-height: 25rem;
.blurred-container {
position: relative;
width: 100%;
min-height: 35vh;
height: $peek-height;
top: 0;
left: 0;
}
.blurred-container .motto {
color: #fff;
font-size: 76px;
font-weight: 600;
text-align: center;
text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
text-transform: uppercase;
top: 7.5vh;
z-index: 3;
display: block;
margin: 0 auto;
position: relative;
width: 60%;
height: 0;
}
.motto h1 {
background: #0000007d;
-webkit-text-stroke: 0.3px $gray-100;
line-height: 1;
}
.blurred-container .img-src {
position: fixed;
width: 100%;
min-height: 35vh;
height: $peek-height;
background-repeat: no-repeat;
background-size: cover;
background-position: center center;
}
.blur {
opacity: 0;
}
.list-main {
position: relative;
background-color: #fff;
padding-bottom: calc(1rem + 95px);
padding-top: 1rem;
}
.footer-contents {
position: relative;
background-color: $gray-200;
}
/* Gives me greater control over fonts */
.font-serif {
font-family: Georgia, "Times New Roman", Times, serif;
}
.font-sans {
font-family: "Open Sans", "Helvetica Neue", Helvetica, Arial, sans-serif;
}
.font-mono {
font-family: Menlo, Monaco, Consolas, "Courier New", monospace;
}
.font-small-caps {
font-variant-caps: small-caps;
}
.strikethrough {
text-decoration: line-through;
}
.sfTable {
margin: 0 auto;
}
.text-align-left {
text-align: left;
}
.text-align-right {
text-align: right;
}
.float-left {
float: left;
}
.float-right {
float: right;
}
.media-object {
max-height: 100%;
max-width: 100%;
}
@media (min-width: 768px) {
.pull-left {
max-width: 25%;
}
.w-md-50 {
width: 50%;
}
}
h1 small {
font-size: 60%;
color: #9a9a9a;
font-weight: 300;
line-height: 1.5;
}
h1 {
font-weight: 400;
margin: 30px 0 15px;
}
.dogear {
clip-path: polygon(0 0, 0 100%, 100% 100%, 100% 25%, 75% 0);
}
.fa-stack-top {
vertical-align: top;
}
.table-condensed th {
padding: 0.5rem;
}
.table-condensed td {
padding: 0.5rem;
}
@media (min-width: map-get($grid-breakpoints, md)) {
.fixed-bottom {
left: 25%;
}
.md-max-width-33 {
max-width: 33%;
}
}
.card-link {
white-space: nowrap;
}
.category-button {
position: absolute;
top: 1em;
right: 1em;
display: grid;
}
.card-title {
margin-right: 2.25em;
}
.thumb-icon-wrapper {
display: flex;
justify-content: center;
}
.thumb-icon-badge {
font-size: xx-large;
}

39
categories/index.html Normal file
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Categories - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Categories</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/paper/><h3 class=card-title>paper</h3></a><div>23 Oct 2023</div><p class=card-text><strong><small><a href=/categories/paper/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/web/><h3 class=card-title>web</h3></a><div>01 Mar 2022</div><p class=card-text><strong><small><a href=/categories/web/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/thesis/><h3 class=card-title>thesis</h3></a><div>07 Aug 2020</div><p class=card-text><strong><small><a href=/categories/thesis/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/poster/><h3 class=card-title>poster</h3></a><div>12 Jun 2019</div><p class=card-text><strong><small><a href=/categories/poster/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/presentation/><h3 class=card-title>presentation</h3></a><div>01 Aug 2018</div><p class=card-text><strong><small><a href=/categories/presentation/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><a href=/categories/video/><h3 class=card-title>video</h3></a><div>16 Feb 2017</div><p class=card-text><strong><small><a href=/categories/video/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://code.millironx.com/ data-bs-toggle=tooltip title="Code (Gitea)"><i class="fax fa-gitea fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://nextcloud.millironx.com/ data-bs-toggle=tooltip title="Files (Nextcloud)"><i class="fax fa-nextcloud fa-fw"></i></a>
<button type=button class="btn btn-outline-primary btn-sm" data-bs-toggle=modal data-bs-target=#extras-modal title=Extras>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>paper - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>paper</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
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and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>paper on MillironX</title><link>https://millironx.com/categories/paper/</link><description>Recent content in paper on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 23 Oct 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/paper/index.xml" rel="self" type="application/rss+xml"/><item><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</title><link>https://millironx.com/academia/taxprofiler/</link><pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/taxprofiler/</guid><description>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.</description></item><item><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</title><link>https://millironx.com/academia/hydronium-pva/</link><pubDate>Fri, 02 Sep 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/hydronium-pva/</guid><description>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.</description></item><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>poster - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>poster</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>poster on MillironX</title><link>https://millironx.com/categories/poster/</link><description>Recent content in poster on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 12 Jun 2019 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/poster/index.xml" rel="self" type="application/rss+xml"/><item><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</title><link>https://millironx.com/academia/metagenomics/</link><pubDate>Wed, 12 Jun 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/metagenomics/</guid><description>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.</description></item><item><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</title><link>https://millironx.com/academia/pva-aiche/</link><pubDate>Mon, 29 Oct 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-aiche/</guid><description>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.</description></item><item><title>Measuring diffusion of protons in polyvinyalginate</title><link>https://millironx.com/academia/pva-inbre/</link><pubDate>Tue, 31 Jul 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-inbre/</guid><description>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.</description></item></channel></rss>

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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>presentation</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/presentation/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Presentation><i class="fad fa-podium fa-fw"></i></a></div><div class=card-body><a href=/academia/how-to-build-a-cow-cud-fuel-cell/><h3 class=card-title>How to Build a Cow-Cud Fuel Cell</h3></a><div>01 Aug 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>thesis - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>thesis</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2><h3 class=card-title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h3></a><div>07 Aug 2020</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve the challenges posed by free proton generation during remediation of trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In this thesis, the challenges posed by systems that contain both diffusion and reaction processes for protons are considered mathematically, and a computer simulation to was developed to prove the relationship between diaphragm cell lag period and reactive capabilities of membranes.
<strong><small><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
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<a href=https://doi.org/10.15786/13700938.v1><h3 class=card-title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h3></a><div>14 May 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the current power source and stopping mechanism.
<strong><small><a href=https://doi.org/10.15786/13700938.v1>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a>
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<a href=/tags/radiation/ class="icon-link card-link"><i class="fad fa-tag"></i> radiation</a>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>video</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/video/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Video><i class="fad fa-video fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/videos/ag-olympics-reel/thumbnail_hub7d50004da040fae48be1df6dea16829_174780_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=/videos/ag-olympics-reel/><h3 class=card-title>Farm Bureau Ag Olympics Reel</h3></a><div>16 Feb 2017</div><p class=card-text>The Albany County Farm Bureau Young Farmer&rsquo;s and Rancher&rsquo;s committee asked me to come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming Football Wyoming Needs Agriculture Day. I gave away all rights to this one except for bragging rights.
<strong><small><a href=/videos/ag-olympics-reel/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/video/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Video><i class="fad fa-video fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/videos/if-you-come-out-to-the-fair/thumbnail_hu834e3603c34a0a256fdd826d65f58c0f_231848_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=/videos/if-you-come-out-to-the-fair/><h3 class=card-title>If You Come Out to the Fair</h3></a><div>13 Oct 2016</div><p class=card-text>My extension agent asked me to make a promotional video for our county fair. This is the only film of mine that has drawn an emotional response. I think I retired after this.
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<a href=/videos/non-verum/><h3 class=card-title>Non. Verum: The Mystery Killer</h3></a><div>12 Jun 2015</div><p class=card-text>My first documentary mockumentary. This film won 2nd place at the 2016 National 4-H Film Festival, and I&rsquo;ve been told that it&rsquo;s more polished than the pieces done by the local TV stations. No one seems to think it&rsquo;s funny, though, so I&rsquo;m not sure how successful it was. Please do me a favor and google every term you don&rsquo;t understand while watching it, and perhaps you&rsquo;ll fare better.
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acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>video on MillironX</title><link>https://millironx.com/categories/video/</link><description>Recent content in video on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Thu, 16 Feb 2017 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/video/index.xml" rel="self" type="application/rss+xml"/><item><title>Farm Bureau Ag Olympics Reel</title><link>https://millironx.com/videos/ag-olympics-reel/</link><pubDate>Thu, 16 Feb 2017 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/ag-olympics-reel/</guid><description>The Albany County Farm Bureau Young Farmer&amp;rsquo;s and Rancher&amp;rsquo;s committee asked me to come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming Football Wyoming Needs Agriculture Day. I gave away all rights to this one except for bragging rights.</description></item><item><title>If You Come Out to the Fair</title><link>https://millironx.com/videos/if-you-come-out-to-the-fair/</link><pubDate>Thu, 13 Oct 2016 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/if-you-come-out-to-the-fair/</guid><description>My extension agent asked me to make a promotional video for our county fair. This is the only film of mine that has drawn an emotional response. I think I retired after this.</description></item><item><title>In The Hayfields</title><link>https://millironx.com/videos/in-the-hayfields/</link><pubDate>Mon, 05 Oct 2015 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/in-the-hayfields/</guid><description>I always get the comment that our implements are old whenever I show this video off. I just ignore the naysayers, though, and good thing, too, because a version of this video won a GoPro Award. Still waiting to see my footage on their channel, though.</description></item><item><title>Non. Verum: The Mystery Killer</title><link>https://millironx.com/videos/non-verum/</link><pubDate>Fri, 12 Jun 2015 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/non-verum/</guid><description>My first documentary mockumentary. This film won 2nd place at the 2016 National 4-H Film Festival, and I&amp;rsquo;ve been told that it&amp;rsquo;s more polished than the pieces done by the local TV stations. No one seems to think it&amp;rsquo;s funny, though, so I&amp;rsquo;m not sure how successful it was. Please do me a favor and google every term you don&amp;rsquo;t understand while watching it, and perhaps you&amp;rsquo;ll fare better.</description></item></channel></rss>

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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>web</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/web/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Web><i class="fad fa-globe fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/websites/millironx/thumbnail_hubcf181c388c669c8dc96bb18248e655a_1401448_600x0_resize_box_3.png alt="Thumbnail of thumbnail.png">
<a href=/websites/millironx/><h3 class=card-title>Milliron X</h3></a><div>01 Mar 2022</div><p class=card-text>Lo and behold: I made my own website!
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<a href=/websites/record-books/><h3 class=card-title>Albany County 4-H Record Books</h3></a><div>10 Aug 2019</div><p class=card-text>I constructed this site to hold the record book helps of the rebellious Albany County, Wyoming. Due to the bureaucratic lag that it takes to update, it got updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh, well.
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Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
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<a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io/src/branch/master/LICENSE><i class="fad fa-scale-balanced"></i>&emsp;MIT Licensed &#187;</a></p><p>In addition, I used a number of excellent open-source libraries
and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
site uses <a href=https://goatcounter.com>GoatCounter</a>, a
privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>draft</dt><dd>false</dd><dt>iscjklanguage</dt><dd>false</dd><dt>title</dt><dd>web</dd></dl></div></div></div></div></div></div></body></html>

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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>web on MillironX</title><link>https://millironx.com/categories/web/</link><description>Recent content in web on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Tue, 01 Mar 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/web/index.xml" rel="self" type="application/rss+xml"/><item><title>Milliron X</title><link>https://millironx.com/websites/millironx/</link><pubDate>Tue, 01 Mar 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/websites/millironx/</guid><description>Lo and behold: I made my own website!</description></item><item><title>Albany County 4-H Record Books</title><link>https://millironx.com/websites/record-books/</link><pubDate>Sat, 10 Aug 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/websites/record-books/</guid><description>I constructed this site to hold the record book helps of the rebellious Albany County, Wyoming. Due to the bureaucratic lag that it takes to update, it got updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh, well.</description></item></channel></rss>

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baseURL = "https://millironx.com"
languageCode = "en-us"
title = "MillironX"
paginate = 5
[build]
writeStats = true
[Params]
cardImage = "saddles"
motto = ""
[taxonomies]
people = "people"
tag = "tags"
category = "categories"
[module]
[[module.mounts]]
source = "static"
target = "static"
[[module.mounts]]
source = "assets/graphics"
target = "assets/graphics"
[[module.mounts]]
source = "assets/images"
target = "assets/images"
[[module.mounts]]
source = "assets/scripts"
target = "assets/scripts"
[[module.mounts]]
source = "assets/styles"
target = "assets/styles"
[[modules.mounts]]
source = "assets/scripts/custom"
target = "assets/scripts/custom"
[[module.mounts]]
source = "./node_modules/@fortawesome/fontawesome-pro/js"
target = "assets/scripts/fontawesome"
[[module.mounts]]
source = "./node_modules/@popperjs/core/dist/umd"
target = "assets/scripts/popper"
[[module.mounts]]
source = "./node_modules/bootstrap/scss"
target = "assets/styles/bootstrap"
[[module.mounts]]
source = "./node_modules/bootswatch/dist/"
target = "assets/styles/bootswatch"
[[module.mounts]]
source = "./node_modules/@openfonts/nunito-sans_all"
target = "static/fonts/nunito-sans"
[[module.mounts]]
source = "./node_modules/bootstrap/dist/js"
target = "assets/scripts/bootstrap"
[[module.mounts]]
source = "./node_modules/fittext.js"
target = "assets/scripts/fittext"
[[module.mounts]]
source = "./node_modules/jquery/dist"
target = "assets/scripts/jquery"
[[module.mounts]]
source = "./node_modules/jquery-mask-plugin/dist"
target = "assets/scripts/jquery-mask-plugin"
[[module.mounts]]
source = "./node_modules/masonry-layout/dist"
target = "assets/scripts/masonry"

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><meta name=description content="Contact form to get ahold of me"><title>Contact Me - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
Home</a></li><li class=nav-item><a class="nav-link pl-0
active" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Contact Me</h1></div><div class=img-src style=background-image:url(/images/venice-mailbox.jpg)></div><div class="img-src blur" style=background-image:url(/images/venice-mailbox_huaca7206bc3a55ef0548c2d4a3e1778c4_598517_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><form class=form-horizontal action=https://usebasin.com/f/787df7bfd22e method=post><fieldset><legend>Contact Me</legend>
<input type=hidden name=_gotcha><div class=form-group><label for=name class="col-lg-2 control-label">Name</label><div class=col-lg-10><input type=text class=form-control id=name name=name placeholder="Jay Lush" required></div></div><div class=form-group><label for=email class="col-lg-2 control-label">Email</label><div class=col-lg-10><input type=email class=form-control id=email name=email placeholder=jlush@iastate.edu required></div></div><div class=form-group><label for=phone class="col-lg-2 control-label">Phone number</label><div class=col-lg-10><input type=tel class=form-control id=phone name=phone placeholder="(515) 294-2160"></div></div><div class=form-group><label for=category class="col-lg-2 control-label">Category</label><div class=col-lg-10><select class=form-select id=category><option>I'm hiring for artificial insemination</option><option>Something else</option></select></div></div><div class=form-group><label for=subject class="col-lg-2 control-label">Subject</label><div class=col-lg-10><input type=text class=form-control id=subject name=subject placeholder="Beef genetics" required></div></div><div class=form-group><label for=message class="col-lg-2 control-label">Message</label><div class=col-lg-10><textarea rows=5 class="form-control font-sans" id=message name=body required style=min-height:72pt></textarea></div></div><div class=form-group><div class="col-lg-10 col-lg-offset-2"><button type=reset class="btn btn-default">Cancel</button>
<button type=submit class="btn btn-primary pageclip-form__submit">
<span>Submit</span></button></div></div></fieldset></form></div><div class=row data-masonry='{"percentPosition": true}'></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://code.millironx.com/ data-bs-toggle=tooltip title="Code (Gitea)"><i class="fax fa-gitea fa-fw"></i></a>
<a class="btn btn-outline-primary btn-sm" href=https://nextcloud.millironx.com/ data-bs-toggle=tooltip title="Files (Nextcloud)"><i class="fax fa-nextcloud fa-fw"></i></a>
<button type=button class="btn btn-outline-primary btn-sm" data-bs-toggle=modal data-bs-target=#extras-modal title=Extras>
<i class="fad fa-cowbell fa-fw"></i></button></div></div></div></div></footer></main></div></div><script src=/js/fontawesome.min.js></script>
<script src=/js/jquery-bundle.js></script>
<script src=/js/bootstrap-bundle.js></script>
<script src=/scripts/masonry/masonry.pkgd.min.js></script>
<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Contact Me&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
<a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io/src/branch/master/LICENSE><i class="fad fa-scale-balanced"></i>&emsp;MIT Licensed &#187;</a></p><p>In addition, I used a number of excellent open-source libraries
and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
site uses <a href=https://goatcounter.com>GoatCounter</a>, a
privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>venice-mailbox</dd><dt>date</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>description</dt><dd>Contact form to get ahold of me</dd><dt>draft</dt><dd>false</dd><dt>fa-thumbnail</dt><dd>fad fa-file-signature</dd><dt>iscjklanguage</dt><dd>false</dd><dt>lastmod</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>menu</dt><dd>map[main:map[name:Contact params:map[icon:fa-file-signature prefix:fad] weight:1]]</dd><dt>motto</dt><dd>Contact Me</dd><dt>publishdate</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>title</dt><dd>Contact Me</dd></dl></div></div></div></div></div></div></body></html>

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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Contact Me on MillironX</title><link>https://millironx.com/contact/</link><description>Recent content in Contact Me on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Sat, 01 Jul 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/contact/index.xml" rel="self" type="application/rss+xml"/></channel></rss>

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@ -1,171 +0,0 @@
---
title: Home
cardImage: charolette
motto: <small>My name is Thomas Christensen</small><br />I am Milliron X
description: The homepage of Thomas A. Christensen II
layout: _default/list
menu:
main:
params:
prefix: fad
icon: fa-home
weight: -1000
---
<h2>What is a "Milliron X"?</h2>
<h3>
It's a
<a href="https://en.wikipedia.org/wiki/Livestock_branding">cattle brand</a>,
of course! My cattle brand!
</h3>
<p>
The <dfn>milliron</dfn> is the bar with a bend in the middle. It does not
represent anything physical or textual <i>per se</i>, and is therefore a
rather unique element in cattle brands. Millirons are difficult to modify into
another brand, and provide a guarantee of authentic ownership.
</p>
<p>
<dfn>X</dfn> is the letter of mystery and mystique. For nerds, it's the
unknown in any algebra problem. Ranchers and cowboys will associate it with
big names like the "Bar X" and the "Double X." In either case, it lends itself
to a sense of withholding, prestige, and power.
</p>
<p>
Together, these two symbols represent the qualities I strive for in each of my
works: authenticity, originality, power, depth, and prestige.
</p>
<h2>Who am I?</h2>
{{% imgproc me-and-lady Resize "768x" "float-md-end w-md-50 p-3" %}}
Image courtesy [Guy McCutcheon Photography](https://www.guymccutcheon.com/)
{{% /imgproc %}}
<p>I am</p>
<ul>
<li>🧬 A bioinformatician (by profession)</li>
<li>📐 An engineer (by education)</li>
<li>🐂 A rancher (by lifestyle)</li>
<li>🖥️ A techie (self-taught)</li>
<li>🎥 And a filmmaker (at heart)</li>
</ul>
<p>
I've got a soft spot for Brown Swiss dairy cows (just in case you couldn't
tell by the pictures), and am sometimes called "one of those crazy, Wyoming
dairy cow people." I love anything to do with cattle or technology, but
especially anything to do with both of them.
</p>
<p>
<em>
<abbr
title="Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist"
>Christian</abbr
>, American, Convervative, Pro-gun, Heterosexual - any questions?
</em>
</p>
<h2>Where am I?</h2>
{{% imgproc wy-in-ks Resize "768x" "float-md-start w-md-50 p-3" / %}}
<p>
I am a Wyomingite sojurning in Kansas. That ought to lead to some interesting
stories.
</p>
Around the web you can find me at (in order of subjective importance)
<ul class="float-md-end w-md-50">
<li>
<i class="fab fa-fw fa-github"></i> GitHub:
<a href="https://github.com/MillironX">@MillironX</a>
</li>
<li>
<i class="fab fa-fw fa-orcid"></i>
ORCiD:
<a href="https://orcid.org/0000-0003-1219-9320">0000-0003-1219-9320</a>
</li>
<li>
<i class="fab fa-fw fa-gitlab"></i>
GitLab: <a href="https://gitlab.com/MillironX">@MillironX</a>
</li>
<li>
<i class="fab fa-fw fa-vimeo"></i>
Vimeo: <a href="https://vimeo.com/tchristensenii">Thomas Christensen II</a>
</li>
<li>
<i class="fab fa-fw fa-stack-overflow"></i>
Stack Exchange:
<a href="https://stackexchange.com/users/4863541/milliron-x">Milliron X</a>
</li>
<li>
<i class="fad fa-fw fa-user-astronaut"></i>
Odysee: <a href="https://odysee.com/@millironx:f">@millironx</a>
</li>
<li>
<span class="fa-layers fa-fw">
<i class="fad fa-fw fa-comment"></i>
<span class="fa-layers-text" data-fa-transform="shrink-6 up-2">g</span>
</span>
Gab: <a href="https://gab.com/millironx">@MillironX</a>
</li>
<li>
<i class="fab fa-fw fa-steam"></i>
Steam: <a href="https://steamcommunity.com/id/millironx">MillironX</a>
</li>
<li>
<span class="fa-layers fa-fw">
<i class="fad fa-fw fa-w" data-fa-transform="shrink-2 down-2"></i>
<i class="fad fa-fw fa-ellipsis" data-fa-transform="grow-3 up-8"></i>
</span>
MeWe:
<a href="https://mewe.com/i/thomaschristensenii">Thomas Christensen II</a>
</li>
<li>
<i class="fab fa-fw fa-discord"></i>
Discord:
<a href="https://discord.com/users/484492414837587978">@MillironX</a>
</li>
</ul>
<div style="clear: both;"></div>
<div class="card border-warning m-3">
<div class="card-body">
<p class="card-text">
This list is intended to verify my identity on other sites. Please do
<em>not</em> use it as fodder to try and "follow" me on each of these
platforms. I stand with RMS:
</p>
<figure>
<blockquote class="blockquote">
<p>
Facebook is a bad place for a person to be. When people find us on
Facebook, we lead them away from Facebook and then talk with them
elsewhere.
</p>
</blockquote>
<figcaption class="blockquote-footer">
Richard Stallman in
<cite
><a href="https://stallman.org/facebook-presence.html"
>If you feel your organization needs a 'presence' in Facebook</a
></cite
>
</figcaption>
</figure>
<p class="card-text">
I typically don't respond to inqueries made on these platforms. Please use
<a href="/contact">my contact form</a>, instead.
</p>
</div>
</div>

View file

@ -1,25 +0,0 @@
---
title: Academic Publications and Presentations
motto: Publications and Presentations
cardImage: library
decription: A list of my academic publications
menu:
main:
name: Academia
params:
prefix: fad
icon: fa-university
weight: 20
fa-thumbnail: fad fa-university
---
> I have spent too long in school and not enough time in the middle of nowhere
>
> -- Baxter Black, DVM
During my time in academia, I have amassed a few notable accomplishments. Of
course, as the old saying goes, "if it isn't published, then it never happened,"
so here is a list of everything that actually happened. Several of these
articles are also available on
[my Google Scholar page](https://scholar.google.com/citations?user=gbP4RDgAAAAJ),
but this is the complete list.

View file

@ -1,29 +0,0 @@
---
title: "The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal"
date: 2019-05-14
cardImage: cannulated-cows
draft: false
featured: true
tags:
- chemical engineering
- AIChE
- radiation
- rumen
- microbial electrolysis cells
categories:
- thesis
people:
- Thomas A. Christensen II
link: https://doi.org/10.15786/13700938.v1
journal: "University of Wyoming Honors Program"
location: "Laramie, Wyoming"
---
The ChemE Car That Cud showcases Wyoming's dominant industries of agriculture
and mining by utilizing rumen fluid from a cannulated beef cow to generate
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
of uranium that is often obtained from Wyoming's mines, to time the car's stop.
The concentration of cesium-137 source is measured using the radioactive decay
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
previous team at UW, and modified using plastic k'nex toys to adapt to the
current power source and stopping mechanism.

View file

@ -1,15 +0,0 @@
---
title: "How to Build a Cow-Cud Fuel Cell"
date: 2018-08-01
cardImage: library
draft: false
featured: false
categories:
- presentation
people:
- Thomas A. Christensen II
journal: "Idaho INBRE Summer Research Conference"
location: "Moscow, Idaho"
awards:
- "3rd Place Fast-Pitch Science Presentation Contest"
---

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@ -1,45 +0,0 @@
---
title:
"Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A
Critical First Step to Describe Acid Transport for Encapsulated Bioremediation"
date: 2022-09-02
featured: false
tags:
- diffusion
- hydrogels
- ionic strength
- polymers
- transport properties
categories:
- paper
people:
- Carson J. Silsby
- Jonathan R. Counts
- Thomas A. Christensen II
- Mark F. Roll
- Kristopher V. Waynant
- James G. Moberly
link: https://doi.org/10.1021/acsestengg.2c00107
journal: "ACS ES&T Engineering"
---
Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be
hindered by high contaminant concentrations and acids generated during
remediation. Encapsulating microbes in hydrogels may provide a protective,
tunable environment from inhibiting compounds; however, current approaches to
formulate successful encapsulated systems rely on trial and error rather than
engineering approaches because fundamental information on mass-transfer
coefficients is lacking. To address this knowledge gap, hydronium ion
mass-transfer rates through two commonly used hydrogel materials, poly(vinyl
alcohol) and alginic acid, under two solidification methods (chemical and
cryogenic) were measured. Variations in hydrogel crosslinking conditions,
polymer composition, and solvent ionic strength were investigated to understand
how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that
the ionic strength, membrane type, and crosslinking method significantly (_p_ <
0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion
diffusion increased with ionic strength, counter to what is observed in
aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to
increased hydronium ion diffusion with ionic strength included an increased
water fraction within hydrogel matrices and hydrogel contraction. Measured
diffusion rates determined in this study provide first principal design
information to further optimize encapsulating hydrogels for bioremediation.

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@ -1,59 +0,0 @@
---
title:
"Metagenomic analysis of rumen populations in week-old calves as altered by
maternal late gestational nutrition and mode of delivery"
date: 2019-06-12
cardImage: cannulated-cows
draft: false
featured: true
tags:
- gestation
- metagenomics
- microbiome
- rumen
categories:
- poster
people:
- Thomas A. Christensen II
- Kathy J. Austin
- Kristi M. Cammack
- Hannah C. Cunningham-Hollinger
link: "/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf"
journal: "Westion Section American Society of Animal Science Annual Meeting"
location: "Boise, Idaho"
awards:
- "1st Place Undergraduate Poster Competition"
---
Early colonization of the rumen microbiome is critical to host health and long
term performance. Factors that influence early colonization include maternal
factors such as gestational nutrition and mode of delivery. Therefore, we
hypothesized that late gestational nutrition and mode of delivery would
influence the calf rumen microbiome. Our objectives were to determine if
nutrient restriction during late gestation alters the calf rumen microbiome and
determine if ruminal microbiome composition differs in calves born vaginally
versus caesarean. Late gestating Angus cows were randomly allocated to one of
three treatment groups: control (**CON**; n = 6), caesarean section (**CS**; n =
4), and nutrient restricted (**NR**; n = 5), where CON were fed DDGS and hay to
meet NRC requirements and calved naturally; CS were fed similarly to CON and
calves were born via caesarean section; and NR were fed at a level to reduce BCS
by 1.5-2.0 points over the last trimester compared to CON and calved naturally.
Rumen fluid was collected via oral lavage prior to partition from cows and at d
7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic
shotgun sequencing was performed using the Illumina HiSeq 2500 platform.
Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by
QIIME1 and QIIME2 to determine differential abundance and alpha- and
beta-diversity differences. There were no significant differences in
alpha-diversity as measured by shannon index across treatment groups for cows
(_P_ = 0.239), but there were significant differences for calves (_P_ = 0.015).
Similarly, there were no significant differences in beta-diversity as measured
by the bray-curtis dissimilarity matrix for cows (_P_ = 0.059), but there were
significant differences for calves (_P_ = 0.007). Alpha-diversity differed (_P_
< 0.001) between cows and calves, with cows having increased species richness
compared to calves. Beta-diversity also differed (_P_ = 0.001) between cows and
calves. At total of 410 taxa were differentially abundant (_P_ < 0.01) between
cows and calves. These results suggest that the mature rumen microbiome of cows
is able to withstand changes in feed intake, however the calf microbiome is
susceptible to alteration by maternal factors. These data also suggest that
there may be opportunities to develop management strategies during late
gestation that influence calf health and performance long-term.

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@ -1,45 +0,0 @@
---
title:
"Measuring Diffusion of Trichlorethylene Breakdown Products in
Polyvinylalginate"
date: 2018-10-29
cardImage: library
draft: false
featured: false
tags:
- bioremediation
- polyoxometalate
- hydrogel polymers
- proton transport
- chemical engineering
categories:
- poster
people:
- Thomas A. Christensen II
- Samuel R. Wolfe
- Jonathan Counts
- Mark F. Roll
- Kristopher V. Waynant
- James G. Moberly
journal: "AIChE Annual Meeting"
location: "Pittsburgh, Pennsylvania"
awards:
- "3rd Place Environmental III Division Undergraduate Poster Competition"
link: /academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf
---
Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique
challenges for cleanup because of its water solubility, density, and volatility.
Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE
results in acid generation that inhibits remediating microorganisms. Calcium
alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting
remediating microbes, however diffusion of TCE or its byproducts through these
polymers is unknown. To measure the effective diffusion coefficient of TCE and
byproducts through hydrogel membranes, we used a modified diaphragm cell.
Measured effective diffusion coefficient of each species was (cm {{< sup 2 >}}/s
× 10{{< sup 6 >}}): 14.0 ± 1.91 for H{{< sup "+" >}} ions, 12.4 ± 1.64 for TCE,
7.83 ± 0.54 for cis-1,2-dichloroethylene (DCE), and 4.68 ± 4.14 for vinyl
chloride. These results aid in engineering biobeads and suggest that CA-PVA
hydrogel blends are effective in slowing diffusion of protons, buffering acids
produced by trichloroethylene metabolism, and remains suitable for encapsulation
of microorganisms involved in bioremediation.

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@ -1,33 +0,0 @@
---
title: "Measuring diffusion of protons in polyvinyalginate"
date: 2018-07-31
cardImage: library
draft: false
featured: false
categories:
- poster
people:
- Thomas A. Christensen II
- Jonathan Counts
- James G. Moberly
journal: "Idaho INBRE Summer Research Conference"
location: "Moscow, Idaho"
---
Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents
unique challenges for cleanup because of its density and volatility. Use of
microorganisms may be a promising remediation method, however metabolism of TCE
results in acid buildup, which consequently impedes the ability of
microorganisms to perform this remediation. Polyvinylalginate (PVA) shows
promise as a useful shield for microorganisms carrying out bioremediation of TCE
by surrounding them in a protective biofilm-like layer, however, key information
is missing which relates diffusion of TCE or its metabolic products through PVA.
To measure the effective diffusion coefficient of H{{< sup "+" >}} ions through
a PVA membrane cross-linked with boric acid and calcium ions, we used a modified
diaphragm cell. We found the effective diffusion coefficient to be 1.40 &times;
10{{< sup -5 >}} ± 1.91 &times; 10{{<sup -6 >}} cm{{< sup 2 >}}s, a nearly
seven-fold decrease in diffusivity compared to protons in water, with an
unexpected significant but as of yet unquantified adsorption capacity. These
results suggest that polyvinylalginate is effective in slowing diffusion of
protons and buffering these acids produced by trichloroethylene metabolism, and
remains suitable for encapsulation of microorganisms involved in bioremediation.

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@ -1,50 +0,0 @@
---
title:
"Assessment of Porcine Rotavirus-associated virome variations in pigs with
enteric disease"
date: 2022-04-27
cardImage: cannulated-cows
featured: true
tags:
- porcine rotavirus
- porcine enteric disease
- virome
- rotavirus
categories:
- paper
people:
- Tyler Doerksen
- Thomas A. Christensen II
- Andrea Lu
- Lance Noll
- Jianfa Bai
- Jamie Henningson
- Rachel Palinski
link: https://doi.org/10.1016/j.vetmic.2022.109447
journal: Veterinary Microbiology
---
Enteric disease is the predominant cause of morbidity and mortality in young
mammals including pigs. Viral species involved in porcine enteric disease
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
and pestiviruses among others. The virome of three groups of swine samples
submitted to the Kansas State University Veterinary Diagnostic Laboratory for
routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a
Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group. All
groups were designated by qRT-PCR results testing for Porcine Rotavirus A, B, C
and H such that samples positive for RVA only went in the RVA group, samples
positive for >1 rotavirus went in the RV group and samples negative for all were
grouped in the RVNeg group. All of the animals had clinical enteric disease
resulting in scours and swollen joints/lameness, enlarged heart and/or a cough.
All samples were metagenomic sequenced and analyzed for viral species
composition that identified 14 viral species and eight bacterial viruses/phages.
Sapovirus and Escherichia coli phages were found at a high prevalence in RVA and
RV samples but were found at low or no prevalence in the RV Neg samples.
Picobirnavirus was identified at a high proportion and prevalence in RV Neg and
RV samples but at a low prevalence in the RVA group. A sequence analysis of the
possible host of Picobirnaviruses revealed fungi as the most likely host.
Non-rotaviral diversity was highest in RVA samples followed by RV then RV Neg
samples. Various sequences were extracted from the sample reads and a
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
genotypes. These data are important for pathogen surveillance and control
measures

View file

@ -1,24 +0,0 @@
---
title:
"nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling"
date: 2023-10-23
featured: true
tags:
- genomics
categories:
- paper
people:
- Sofia Stamouli
- Moritz E. Beber
- Tanja Normark
- Thomas A. Christensen II
- Lili Andersson-Li
- Maxime Borry
- Mahwash Jamy
- nf-core community
- James A. Fellows Yate
link: https://doi.org/10.1101/2023.10.20.563221
journal: bioRxiv
---
Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.

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@ -1,44 +0,0 @@
---
title:
"Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel
Polymers"
date: 2020-08-07
cardImage: library
draft: false
featured: true
tags:
- bioremediation
- polyoxometalate
- hydrogel polymers
- proton transport
- chemical engineering
categories:
- thesis
people:
- Thomas A. Christensen II
link: "https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2"
journal: "University of Idaho"
location: "Moscow, Idaho"
---
Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
the challenges posed by free proton generation during remediation of
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
this thesis, the challenges posed by systems that contain both diffusion and
reaction processes for protons are considered mathematically, and a computer
simulation to was developed to prove the relationship between diaphragm cell lag
period and reactive capabilities of membranes. Two polyoxometalate compounds,
sodium decavanadate and alumina sulfate, were successfully incorporated into a
poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
with each compound was determined. It was found that the diffusivity of protons
through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
10{{< sup -5 >}} cm{{< sup 2 >}} s{{< sup -1 >}}, the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 ×
10{{< sup -6 >}} cm{{< sup 2 >}} s{{< sup -1 >}}, and the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/alumina sulfate membrane was 3.32 ×
10{{< sup -7 >}} cm{{< sup 2 >}} s{{< sup -1 >}}. Through analysis of the
diaphragm cell lag period, it was found the incorporation of sodium decavanadate
did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
incorporation of alumina sulfate lowered the reactivity. These results indicate
that polyoxometalate integration into hydrogel membranes is feasible, but does
not provide any advantage to a bioremediation scenario.

View file

@ -1,76 +0,0 @@
---
title: Artificial Insemination
cardImage: Ai-calf
motto: Artificial Insemination
description:
Advertising page to try and sell my artificial insemination services
date: 2022-12-31
menu:
main:
params:
prefix: fax
icon: fa-bull-sperm
weight: 30
fa-thumbnail: fax fa-bull-sperm
---
<section itemscope itemtype="http://schema.org/Product">
<h2 itemprop="name">Cattle artificial insemination services</h2>
<p>
I am licensed in the Great State of Wyoming as a food animal artificial
insemination technician. I only offer AI services for cows, even though
legally I <em>could</em> AI cows, goats, and sheep. My services are most
readily available in the southeast Wyoming area or the Flint Hills of Kansas
depending on the time of year.
</p>
<h3>Rate schedule</h3>
<div itemprop="offers" itemscope itemtype="http://schema.org/Offer">
<table
itemprop="priceSpecification"
itemscope
itemtype="http://schema.org/CompoundPriceSpecification"
class="table table-responsive table-striped"
>
<meta itemprop="price" content="25.00" />
<meta itemprop="priceCurrency" content="USD" />
<tr
itemprop="priceComponent"
itemscope
itemtype="http://schema.org/UnitPriceSpecification"
>
<th>Insemination</th>
<td><small>(per cow)</small></td>
<td>
<span itemprop="priceCurrency" content="USD">$</span
><span itemprop="price">25.00</span>
</td>
<td><small>5 cow minimum charge</small></td>
</tr>
<tr
itemprop="priceComponent"
itemscope
itemtype="http://schema.org/UnitPriceSpecification"
>
<th>Milage</th>
<td><small>(per mile, one-way)</small></td>
<td>
<span itemprop="priceCurrency" content="USD">$</span
><span itemprop="price">1.05</span>
</td>
<td><small>2.5 mile minimum charge</small></td>
</tr>
</table>
</div>
<p>
I will provide all equipment <strong>except</strong> semen storage (liquid
nitrogen tank) and cattle handling (i.e., squeeze chute).
</p>
<p>
To get started, <a href="/contact">contact me</a>, and select the "I'm
hiring for artificial insemination" option.
</p>
</section>

View file

@ -1,45 +0,0 @@
---
draft: true
---
## Stuff I like on the internet
This section of a website used to be called a "blogroll." I don't know what it's
called now. In order to be on this list, I must have been subscribed or
otherwise follow it for over a year. It's amazing how little stuff on the
internet can't make that cut.
### [Thru the Bible](https://ttb.org/)
I'm convinced that the word of God is timeless, and we need less commentary and
cherry-picking of favorite verses, and more study of the complete Bible. Dr.
McGee does just that.
### [Enoch the Cow Vet](https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw)
A veterinarian/agricultural channel that doesn't make me cringe. "God built
these things for cows for vets ... [there are] so many aspects of the cow that
are just designed for vets." Amen, Enoch. Amen.
### [Proglogion](https://blog.drwile.com/)
The blog of my high school science teacher (of sorts). It is refreshing to find
a creationist who can still think critically. I love his "bad sermon
illustrations" posts.
### [The Milk Check](https://www.jacoby.com/learning-center/podcasts-overview/)
A pragmatic inside look at dairy marketing. I only understand half of what
they're talking about, but I learn something new every episode.
### [Brian Harry's Blog](https://devblogs.microsoft.com/bharry/)
Where else are you going to find a blog about cows _and_ version control? The
blog is basically dead now, but it's still fun to go back and read the farm
stories.
### [Car Talk](https://cartalk.com/)
The antics of these guys are enough to make anyone have to pull over to the side
of the road from laughing too much. I dread the day when NPR fully axes the only
good program to cross their airwaves.

View file

@ -1,107 +0,0 @@
---
title: Contact Me
cardImage: venice-mailbox
motto: Contact Me
description: Contact form to get ahold of me
date: 2023-07-01
menu:
main:
name: Contact
params:
prefix: fad
icon: fa-file-signature
weight: 1
fa-thumbnail: fad fa-file-signature
---
<form
class="form-horizontal"
action="https://usebasin.com/f/787df7bfd22e"
method="post"
>
<fieldset>
<legend>Contact Me</legend>
<input type="hidden" name="_gotcha" />
<div class="form-group">
<label for="name" class="col-lg-2 control-label">Name</label>
<div class="col-lg-10">
<input
type="text"
class="form-control"
id="name"
name="name"
placeholder="Jay Lush"
required
/>
</div>
</div>
<div class="form-group">
<label for="email" class="col-lg-2 control-label">Email</label>
<div class="col-lg-10">
<input
type="email"
class="form-control"
id="email"
name="email"
placeholder="jlush@iastate.edu"
required
/>
</div>
</div>
<div class="form-group">
<label for="phone" class="col-lg-2 control-label">Phone number</label>
<div class="col-lg-10">
<input
type="tel"
class="form-control"
id="phone"
name="phone"
placeholder="(515) 294-2160"
/>
</div>
</div>
<div class="form-group">
<label for="category" class="col-lg-2 control-label">Category</label>
<div class="col-lg-10">
<select class="form-select" id="category">
<option>I'm hiring for artificial insemination</option>
<option>Something else</option>
</select>
</div>
</div>
<div class="form-group">
<label for="subject" class="col-lg-2 control-label">Subject</label>
<div class="col-lg-10">
<input
type="text"
class="form-control"
id="subject"
name="subject"
placeholder="Beef genetics"
required
/>
</div>
</div>
<div class="form-group">
<label for="message" class="col-lg-2 control-label">Message</label>
<div class="col-lg-10">
<textarea
rows="5"
class="form-control font-sans"
id="message"
name="body"
required
style="min-height: 72pt;"
></textarea>
</div>
</div>
<div class="form-group">
<div class="col-lg-10 col-lg-offset-2">
<button type="reset" class="btn btn-default">Cancel</button>
<button type="submit" class="btn btn-primary pageclip-form__submit">
<span>Submit</span>
</button>
</div>
</div>
</fieldset>
</form>

View file

@ -1,7 +0,0 @@
---
title: "New Site"
date: 2022-01-13T19:09:50-06:00
draft: true
---
I have a new website! Narf!

View file

@ -1,23 +0,0 @@
---
title: Videos
cardImage: camera
motto: Videography Portfolio
description: Showcase of my own videos
menu:
main:
params:
prefix: fad
icon: fa-video
fa-thumbnail: fad fa-video
---
> ### The culmination of all art forms is that of film.
A good film must have the plot and language of a good novel, characters as bold
and stunning as sculpture, a rhythm as driving and delicate as poetry, frame
compositions more stellar that those of photography, and music that speaks to
the souls of both the characters on screen and the viewers off.
But I digress. Most of my forays into the world of film are immortalized on
[my Peertube channel](https://video.millironx.com/c/mix_studios/videos), but I
decided to share a few highlights here. Enjoy!

View file

@ -1,14 +0,0 @@
---
title: "Farm Bureau Ag Olympics Reel"
date: 2017-02-16
storage: yt
storageId: jhLJp3OFsYM
thumbnail: https://i.ytimg.com/vi_webp/jhLJp3OFsYM/maxresdefault.webp
categories:
- video
---
The Albany County Farm Bureau Young Farmer's and Rancher's committee asked me to
come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming
Football Wyoming Needs Agriculture Day. I gave away all rights to this one
except for bragging rights.

View file

@ -1,13 +0,0 @@
---
title: If You Come Out to the Fair
date: 2016-10-13
storage: peertube
storageId: 3a872dbf-4141-4bec-8a0c-11f5c1db2328
thumbnail: https://video.millironx.com/lazy-static/previews/d1f33911-fdff-461d-a485-54de0bde79f3.jpg
categories:
- video
---
My extension agent asked me to make a promotional video for our county fair.
This is the only film of mine that has drawn an emotional response. I think I
retired after this.

View file

@ -1,14 +0,0 @@
---
title: In The Hayfields
date: 2015-10-05
storage: peertube
storageId: a755f140-123a-4435-8002-0da2d0c831e9
thumbnail: https://video.millironx.com/lazy-static/previews/837d70cd-b5dc-48be-bc65-84a50ae29c99.jpg
categories:
- video
---
I always get the comment that our implements are _old_ whenever I show this
video off. I just ignore the naysayers, though, and good thing, too, because a
version of this video won a [GoPro Award](https://gopro.com/awards). Still
waiting to see my footage on their channel, though.

View file

@ -1,16 +0,0 @@
---
title: "Non. Verum: The Mystery Killer"
date: 2015-06-12
storage: peertube
storageId: 03ac71e5-69b2-4c3d-b8b2-da98055cd953
thumbnail: https://video.millironx.com/lazy-static/previews/6c479593-5bcf-4953-bbe5-99c4b4a87a79.jpg
categories:
- video
---
My first ~~documentary~~ mockumentary. This film won 2{{< sup nd >}} place at
the [2016 National 4-H Film Festival](http://4h.missouri.edu/filmfest4h/), and
I've been told that it's more polished than the pieces done by the local TV
stations. No one seems to think it's funny, though, so I'm not sure how
successful it was. Please do me a favor and google **every** term you don't
understand while watching it, and perhaps you'll fare better.

View file

@ -1,18 +0,0 @@
---
title: My Websites
cardImage: eclipse
motto: Websites
description: List of websites that I have worked on
menu:
main:
name: Websites
params:
prefix: fad
icon: fa-browser
fa-thumbnail: fad fa-browser
---
I do occasionally build websites for myself and other people. Here is a list of
websites I have contributed code to directly, in a vain attempt to gain each of
them some
[search engine cred](https://en.wikipedia.org/wiki/Search_engine_optimization).

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@ -1,13 +0,0 @@
---
title: Milliron X
date: 2022-03-01
platform: Hugo
platformIcon: fab fa-golang
platformURL: https://gohugo.io/
deployURL: https://millironx.com
sourceURL: https://github.com/MillironX/millironx.github.io
categories:
- web
---
Lo and behold: I made my own website!

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@ -1,16 +0,0 @@
---
title: Albany County 4-H Record Books
date: 2019-08-10
platform: Plain ol' HTML5
platformIcon: fab fa-html5
platformURL: https://www.w3.org/html/
deployURL: http://wyoming4h.org/albany4h/record-book
sourceURL: https://github.com/MillironX/4h-record-books
categories:
- web
---
I constructed this site to hold the record book helps of the rebellious Albany
County, Wyoming. Due to the bureaucratic lag that it takes to update, it got
updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh,
well.

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{ pkgs ? import (fetchTarball "https://github.com/NixOS/nixpkgs/archive/994e2ef9e9c70b4dd7257f73452a94e871723685.tar.gz") {} }:
pkgs.mkShell {
buildInputs = [
pkgs.hugo
pkgs.nodejs
pkgs.git-crypt
];
}

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# nunito-sans_all
The CSS and web font files to easily self-host “Nunito Sans” with subset "all".
## Install
`npm install --save @openfonts/nunito-sans_all`
## Use
Typefaces assume youre using webpack to process CSS and files. Each typeface
package includes all necessary font files (woff2, woff) and a CSS file with
font-face declarations pointing at these files.
You will need to have webpack setup to load css and font files. Many tools built
with Webpack will work out of the box with Typefaces such as [Gatsby](https://github.com/gatsbyjs/gatsby)
and [Create React App](https://github.com/facebookincubator/create-react-app).
To use, simply require the package in your projects entry file e.g.
```javascript
// Load Nunito Sans typeface
require('@openfonts/nunito-sans_all')
```
Usage in SCSS:
```scss
@import "~@openfonts/nunito-sans_all/index.css";
```

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{"lastModified":"2020-09-10","version":"v6"}

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