mirror of
https://github.com/MillironX/sc2-sequencing.git
synced 2024-12-22 11:18:17 +00:00
61 lines
1.7 KiB
Markdown
61 lines
1.7 KiB
Markdown
# SC2 Sequencing Cheats
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File manipulation/bioinformatics-type scripts that my colleuges have found
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useful in sequencing SARS-CoV2 (SC2).
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These scripts have various purposes, uses, and instructions. The only unifying
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thing about them is that they were all written for SC2 and related sequencing.
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Please check the `README` file in each directory for more detailed instructions.
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## Encryption
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**NOTICE:** Some files in this repository are encrypted using
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[git-crypt](https://github.com/AGWA/git-crypt). git-crypt works on a
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repository-wide basis, meaning that decryption must occur on the entire
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repository.
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### Installing git-crypt
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#### Ubuntu, Debian, etc.
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```bash
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sudo apt-get install git-crypt -y
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```
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#### Fedora, CentOS, RHEL, etc.
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```bash
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sudo yum install git-crypt -y
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```
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#### MacOS
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Install [Homebrew](https://brew.sh/) first. Then
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```bash
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brew install git-crypt
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```
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#### Windows
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There are no official git-crypt builds for Windows. I repeat, **git-crypt does
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not exist for Windows** regardless of what others may tell you. If possible, you
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may use the [Windows Subsystem for
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Linux](https://docs.microsoft.com/en-us/windows/wsl/install-win10), but you
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cannot use native git-crypt.
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### Decrypting the repository
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Encryption is GPG-based. If your GPG key has been added to the repository (you
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know if you have access), then run
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```bash
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git clone https://github.com/MillironX/sc2-sequencing.git && cd sc2-sequencing
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git-crypt unlock
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```
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The files will now be decrypted and can be usable.
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If you need to copy your GPG keys to a new machine to be able to decrypt the
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files, follow the instructions at
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<https://www.phildev.net/pgp/gpg_moving_keys.html> under "Copy Just Your Keys."
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