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singularity-builds/README.md
Thomas A. Christensen II 12a8ac3490
Switch to Ubuntu-based image 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
2021-12-02 10:13:08 -06:00

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NanoSim

Container source NanoSim source Version 3.0.2 Docs Ubuntu base

NanoSim is a fast and scalable read simulator that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of nanopore sequencing technology.

Tools installed

Minimap2

  • minimap2

LAST

  • lastdb
  • lastal
  • last-split
  • last-merge-batches
  • last-pair-probs
  • lastdb8
  • lastal8
  • last-split8
  • fastq-interleave
  • last-dotplot
  • last-map-probs
  • last-postmark
  • last-train
  • maf-convert
  • maf-join
  • maf-sort
  • maf-swap
  • parallel-fasta
  • parallel-fastq

Samtools

  • samtools

GenomeTools

  • gt

NanoSim

  • read_analysis.py
  • simulator.py