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Thomas A. Christensen II
12a8ac3490
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com> |
2 years ago | |
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.vscode | 3 years ago | |
.gitattributes | 3 years ago | |
.gitignore | 3 years ago | |
Dockerfile | 2 years ago | |
LICENSE.md | 3 years ago | |
README.md | 2 years ago | |
singularity-builds-artwork.svg | 3 years ago |
README.md
NanoSim
NanoSim is a fast and scalable read simulator that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of nanopore sequencing technology.
Tools installed
Minimap2
minimap2
LAST
lastdb
lastal
last-split
last-merge-batches
last-pair-probs
lastdb8
lastal8
last-split8
fastq-interleave
last-dotplot
last-map-probs
last-postmark
last-train
maf-convert
maf-join
maf-sort
maf-swap
parallel-fasta
parallel-fastq
Samtools
samtools
GenomeTools
gt
NanoSim
read_analysis.py
simulator.py