singularity-builds/minimap_plus/README.md

# minimap2 (plus goodies)

[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/minimap_plus)
[![minimap2 source](https://img.shields.io/static/v1?label=minimap2%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/lh3/minimap2)
[![Version 2.22](https://img.shields.io/static/v1?label=Latest%20version&message=2.22&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/minimap_plus)
[![Docs](https://img.shields.io/static/v1?label=Docs&message=web&color=blue&style=flat-square)](https://lh3.github.io/minimap2/)
[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database.

## Tools installed

### minimap2

- `minimap2`

### samtools

- `samtools`

### Perl

- `perl`

### samclip

- `samclip`