taxprofiler/modules.json

{
    "name": "nf-core/taxprofiler",
    "homePage": "https://github.com/nf-core/taxprofiler",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "adapterremoval": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bbmap/bbduk": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bowtie2/align": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bowtie2/build": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bracken/bracken": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "bracken/combinebrackenoutputs": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "cat/fastq": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "centrifuge/centrifuge": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "centrifuge/kreport": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "custom/dumpsoftwareversions": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "diamond/blastx": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "falco": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/falco/falco.diff"
                    },
                    "fastp": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "fastqc": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "filtlong": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "gunzip": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "kaiju/kaiju": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "kaiju/kaiju2krona": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "kaiju/kaiju2table": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "kraken2/kraken2": {
                        "branch": "master",
                        "git_sha": "7c695e0147df1157413e06246d9b0094617d3e6b",
                        "installed_by": ["modules"]
                    },
                    "krakentools/combinekreports": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "krakentools/kreport2krona": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "krakenuniq/preloadedkrakenuniq": {
                        "branch": "master",
                        "git_sha": "a6eb17f65b3ee5761c25c075a6166c9f76733cee",
                        "installed_by": ["modules"]
                    },
                    "krona/ktimporttaxonomy": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "krona/ktimporttext": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "malt/run": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "megan/rma2info": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "metaphlan3/mergemetaphlantables": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "metaphlan3/metaphlan3": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "minimap2/align": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "minimap2/index": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "motus/merge": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "motus/profile": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "ee80d14721e76e2e079103b8dcd5d57129e584ba",
                        "installed_by": ["modules"]
                    },
                    "porechop/porechop": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/porechop/porechop/porechop-porechop.diff"
                    },
                    "prinseqplusplus": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "samtools/fastq": {
                        "branch": "master",
                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
                        "installed_by": ["modules"]
                    },
                    "samtools/index": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "samtools/stats": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "samtools/view": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    },
                    "taxpasta/merge": {
                        "branch": "master",
                        "git_sha": "ffa9641ee18f88aff974257cb50ba3cf8f7d143c",
                        "installed_by": ["modules"]
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
                        "installed_by": ["modules"]
                    }
                }
            }
        }
    }
}
initial template build from nf-core/tools, version 2.2 2022-02-18 06:55:14 +00:00			`{`
			`"name": "nf-core/taxprofiler",`
			`"homePage": "https://github.com/nf-core/taxprofiler",`
			`"repos": {`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`"https://github.com/nf-core/modules.git": {`
Template update for nf-core/tools version 2.5 2022-08-30 13:43:03 +00:00			`"modules": {`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`"nf-core": {`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"adapterremoval": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"bbmap/bbduk": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"bowtie2/align": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"bowtie2/build": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
chore: install Bracken module 2022-10-14 08:52:17 +00:00			`"bracken/bracken": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
chore: install Bracken module 2022-10-14 08:52:17 +00:00			`},`
Start adding bracken/combinebrackenreports (need smodule update) 2022-12-11 15:52:34 +00:00			`"bracken/combinebrackenoutputs": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Start adding bracken/combinebrackenreports (need smodule update) 2022-12-11 15:52:34 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"cat/fastq": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"centrifuge/centrifuge": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"centrifuge/kreport": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`"custom/dumpsoftwareversions": {`
			`"branch": "master",`
Template update for nf-core/tools version 2.7.2 2022-12-19 12:10:58 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"diamond/blastx": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Add Falco as an alternative to FastQC 2022-10-18 15:43:16 +00:00			`"falco": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"],`
Include falco patch 2022-12-15 12:27:41 +00:00			`"patch": "modules/nf-core/falco/falco.diff"`
Add Falco as an alternative to FastQC 2022-10-18 15:43:16 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"fastp": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`"fastqc": {`
			`"branch": "master",`
Template update for nf-core/tools version 2.7.2 2022-12-19 12:10:58 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"filtlong": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"gunzip": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"kaiju/kaiju": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"kaiju/kaiju2krona": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"kaiju/kaiju2table": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"kraken2/kraken2": {`
			`"branch": "master",`
BUmp Kraken2 nf-core module to prevent huge logs 2023-04-20 13:20:26 +00:00			`"git_sha": "7c695e0147df1157413e06246d9b0094617d3e6b",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"krakentools/combinekreports": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"krakentools/kreport2krona": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
include krakenuniq in profiling subworkflow 2022-10-25 09:45:05 +00:00			`"krakenuniq/preloadedkrakenuniq": {`
			`"branch": "master",`
Bump KrakenUniq version 2022-12-20 19:08:12 +00:00			`"git_sha": "a6eb17f65b3ee5761c25c075a6166c9f76733cee",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
include krakenuniq in profiling subworkflow 2022-10-25 09:45:05 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"krona/ktimporttaxonomy": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"krona/ktimporttext": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"malt/run": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"megan/rma2info": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"metaphlan3/mergemetaphlantables": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"metaphlan3/metaphlan3": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"minimap2/align": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"minimap2/index": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"motus/merge": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"motus/profile": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`"multiqc": {`
			`"branch": "master",`
update MultiQC and include latest modules 2023-01-16 13:39:52 +00:00			`"git_sha": "ee80d14721e76e2e079103b8dcd5d57129e584ba",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Fix porechop conflict 2022-11-01 16:34:37 +00:00			`"porechop/porechop": {`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"],`
Tweaks to MultiQC based on full test experiments 2023-01-24 14:06:42 +00:00			`"patch": "modules/nf-core/porechop/porechop/porechop-porechop.diff"`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"prinseqplusplus": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Subsitute samtools/bam2fq with samtools/fastq 2023-03-23 14:30:07 +00:00			`},`
			`"samtools/fastq": {`
			`"branch": "master",`
			`"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
Add samtools stats for long-reads 2022-10-28 09:40:50 +00:00			`"samtools/index": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Add samtools stats for long-reads 2022-10-28 09:40:50 +00:00			`},`
			`"samtools/stats": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Add samtools stats for long-reads 2022-10-28 09:40:50 +00:00			`},`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`"samtools/view": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Add taxpasta_merge to taxprofiler 2023-02-16 13:29:52 +00:00			`},`
			`"taxpasta/merge": {`
			`"branch": "master",`
Updata taxpasta 2023-03-13 07:58:59 +00:00			`"git_sha": "ffa9641ee18f88aff974257cb50ba3cf8f7d143c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 10:07:22 +00:00			`},`
			`"untar": {`
			`"branch": "master",`
update all modules to make templaite compatible 2022-12-23 16:23:05 +00:00			`"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",`
Prettier 2023-03-31 08:35:40 +00:00			`"installed_by": ["modules"]`
Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00			`}`
Template update for nf-core/tools version 2.5 2022-08-30 13:43:03 +00:00			`}`
initial template build from nf-core/tools, version 2.2 2022-02-18 06:55:14 +00:00			`}`
			`}`
			`}`
Prettier 2023-03-31 08:35:40 +00:00			`}`