2022-02-18 06:55:14 +00:00
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{
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"name": "nf-core/taxprofiler",
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"homePage": "https://github.com/nf-core/taxprofiler",
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"repos": {
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2022-10-05 03:30:53 +00:00
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"https://github.com/nf-core/modules.git": {
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2022-08-30 13:43:03 +00:00
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"modules": {
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2022-10-05 03:30:53 +00:00
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"nf-core": {
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2022-10-05 10:07:22 +00:00
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"adapterremoval": {
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"branch": "master",
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2022-10-27 12:17:19 +00:00
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"git_sha": "ce7cf27e377fdacf7ebe8e75903ec70405ea1659"
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2022-10-05 10:07:22 +00:00
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},
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"bbmap/bbduk": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"bowtie2/align": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"bowtie2/build": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-14 08:52:17 +00:00
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"bracken/bracken": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 10:07:22 +00:00
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"cat/fastq": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"centrifuge/centrifuge": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"centrifuge/kreport": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 03:30:53 +00:00
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"custom/dumpsoftwareversions": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 10:07:22 +00:00
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"diamond/blastx": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"eido/convert": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"eido/validate": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-18 15:43:16 +00:00
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"falco": {
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"branch": "master",
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"git_sha": "fc959214036403ad83efe7a41d43d0606c445cda"
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},
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2022-10-05 10:07:22 +00:00
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"fastp": {
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"branch": "master",
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2022-11-02 11:39:34 +00:00
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"git_sha": "1e49f31e93c56a3832833eef90a02d3cde5a3f7e"
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2022-10-05 10:07:22 +00:00
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},
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2022-10-05 03:30:53 +00:00
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"fastqc": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 10:07:22 +00:00
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"filtlong": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"gunzip": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"kaiju/kaiju": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"kaiju/kaiju2krona": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"kaiju/kaiju2table": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"kraken2/kraken2": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"krakentools/combinekreports": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"krakentools/kreport2krona": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-25 09:45:05 +00:00
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"krakenuniq/preloadedkrakenuniq": {
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"branch": "master",
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2022-11-29 09:27:35 +00:00
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"git_sha": "05649975c6611c6e007537a7984e186e12ae03af"
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2022-10-25 09:45:05 +00:00
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},
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2022-10-05 10:07:22 +00:00
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"krona/ktimporttaxonomy": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"krona/ktimporttext": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"malt/run": {
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"branch": "master",
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2022-11-24 13:44:04 +00:00
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"git_sha": "6d9712f03ec2de8264a50ee4541a617e1e063b51"
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2022-10-05 10:07:22 +00:00
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},
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"megan/rma2info": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"metaphlan3/mergemetaphlantables": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"metaphlan3/metaphlan3": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"minimap2/align": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"minimap2/index": {
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"branch": "master",
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2022-10-11 10:38:18 +00:00
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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2022-10-05 10:07:22 +00:00
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},
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"motus/merge": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"motus/profile": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 03:30:53 +00:00
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"multiqc": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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2022-10-05 10:07:22 +00:00
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},
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2022-11-01 16:34:37 +00:00
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"porechop/porechop": {
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2022-10-05 10:07:22 +00:00
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"branch": "master",
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2022-11-01 16:34:37 +00:00
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"git_sha": "2a4e85eb81875a572bb58133e37f84ba3cc484d7"
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2022-10-05 10:07:22 +00:00
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},
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"prinseqplusplus": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"samtools/bam2fq": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-28 09:40:50 +00:00
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"samtools/index": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"samtools/stats": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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2022-10-05 10:07:22 +00:00
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"samtools/view": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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},
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"untar": {
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"branch": "master",
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"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
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2022-10-05 03:30:53 +00:00
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}
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2022-08-30 13:43:03 +00:00
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}
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2022-02-18 06:55:14 +00:00
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}
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}
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}
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2022-03-23 13:57:56 +00:00
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}
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