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taxprofiler/modules.json

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{
"name": "nf-core/taxprofiler",
"homePage": "https://github.com/nf-core/taxprofiler",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"adapterremoval": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"bbmap/bbduk": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"bowtie2/align": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"bowtie2/build": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
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"bracken/bracken": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
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},
"bracken/combinebrackenoutputs": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"cat/fastq": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"centrifuge/centrifuge": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"centrifuge/kreport": {
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"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
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"installed_by": ["modules"]
},
"diamond/blastx": {
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"installed_by": ["modules"]
},
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"falco": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"],
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"patch": "modules/nf-core/falco/falco.diff"
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},
"fastp": {
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"installed_by": ["modules"]
},
"fastqc": {
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"installed_by": ["modules"]
},
"filtlong": {
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"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
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"installed_by": ["modules"]
},
"kaiju/kaiju": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"kaiju/kaiju2krona": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"kaiju/kaiju2table": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"kraken2/kraken2": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"installed_by": ["modules"]
},
"krakentools/combinekreports": {
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"installed_by": ["modules"]
},
"krakentools/kreport2krona": {
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"installed_by": ["modules"]
},
"krakenuniq/preloadedkrakenuniq": {
"branch": "master",
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"git_sha": "a6eb17f65b3ee5761c25c075a6166c9f76733cee",
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"installed_by": ["modules"]
},
"krona/ktimporttaxonomy": {
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"installed_by": ["modules"]
},
"krona/ktimporttext": {
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"installed_by": ["modules"]
},
"malt/run": {
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"installed_by": ["modules"]
},
"megan/rma2info": {
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"installed_by": ["modules"]
},
"metaphlan3/mergemetaphlantables": {
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"installed_by": ["modules"]
},
"metaphlan3/metaphlan3": {
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"installed_by": ["modules"]
},
"minimap2/align": {
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"installed_by": ["modules"]
},
"minimap2/index": {
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"installed_by": ["modules"]
},
"motus/merge": {
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"installed_by": ["modules"]
},
"motus/profile": {
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"installed_by": ["modules"]
},
"multiqc": {
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"installed_by": ["modules"]
},
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"porechop/porechop": {
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"installed_by": ["modules"],
"patch": "modules/nf-core/porechop/porechop/porechop-porechop.diff"
},
"prinseqplusplus": {
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"installed_by": ["modules"]
},
"samtools/bam2fq": {
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"installed_by": ["modules"]
},
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"samtools/index": {
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"installed_by": ["modules"]
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},
"samtools/stats": {
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"installed_by": ["modules"]
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},
"samtools/view": {
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"installed_by": ["modules"]
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},
"taxpasta/merge": {
"branch": "master",
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"git_sha": "ffa9641ee18f88aff974257cb50ba3cf8f7d143c",
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"installed_by": ["modules"]
},
"untar": {
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"installed_by": ["modules"]
}
}
}
}
}
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}