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James A. Fellows Yates 2022-03-25 15:32:56 +01:00 committed by GitHub
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1 changed files with 3 additions and 4 deletions
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subworkflows/local/shortread_preprocessing.nf
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@ -29,12 +29,11 @@ workflow SHORTREAD_PREPROCESSING {
ch_processed_reads = reads ch_processed_reads = reads
} }
//FASTQC_PROCESSED ( ch_processed_reads ) FASTQC_PROCESSED ( ch_processed_reads )
//ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions ) ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions )
//ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} ) ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} )
emit: emit:
// TODO: problem, this is being exported as a multi-channel output? This is why FASTQC is broken
reads = ch_processed_reads // channel: [ val(meta), [ reads ] ] reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]
versions = ch_versions // channel: [ versions.yml ] versions = ch_versions // channel: [ versions.yml ]
mqc = ch_multiqc_files mqc = ch_multiqc_files