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Add taxonomy directory param

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This commit is contained in:
James Fellows Yates 2022-06-30 11:43:52 +02:00
parent af854f5f34
commit 0050f45345
2 changed files with 5 additions and 0 deletions
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1
nextflow.config
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@ -128,6 +128,7 @@ params {
// krona // krona
run_krona = false run_krona = false
krona_taxonomy_directory = null
} }
// Load base.config by default for all pipelines // Load base.config by default for all pipelines

4
subworkflows/local/visualization_krona.nf
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@ -51,6 +51,10 @@ workflow VISUALIZATION_KRONA {
ch_krona_html = ch_krona_html.mix( KRONA_KTIMPORTTEXT.out.html ) ch_krona_html = ch_krona_html.mix( KRONA_KTIMPORTTEXT.out.html )
ch_versions = ch_versions.mix( KRONA_KTIMPORTTEXT.out.versions.first() ) ch_versions = ch_versions.mix( KRONA_KTIMPORTTEXT.out.versions.first() )
/*
Convert Krona
*/
emit: emit:
html = ch_krona_html html = ch_krona_html
versions = ch_versions versions = ch_versions