Fix versions of other non-standard containers

1 year ago · 3a45c45101
parent dfb2e02eb3
commit 3a45c45101
2 changed files with 2 additions and 2 deletions
--- a/modules/local/kraken2_standard_report.nf
+++ b/modules/local/kraken2_standard_report.nf
@ -5,7 +5,7 @@ process KRAKEN2_STANDARD_REPORT {
    conda "conda-forge::sed=4.7"
    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'ubuntu:20.04' }"
+        'docker.io/ubuntu:20.04' }"

    input:
    tuple val(meta), path(report)
--- a/modules/local/krona_cleanup.nf
+++ b/modules/local/krona_cleanup.nf
@ -5,7 +5,7 @@ process KRONA_CLEANUP {
    conda "conda-forge::sed=4.7"
    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'ubuntu:20.04' }"
+        'docker.io/ubuntu:20.04' }"

    input:
    tuple val(meta), path(krona, stageAs: 'uncleaned.krona.txt')