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Fix versions of other non-standard containers

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This commit is contained in:
James Fellows Yates 2023-05-02 14:06:51 +02:00
parent dfb2e02eb3
commit 3a45c45101
2 changed files with 2 additions and 2 deletions
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2
modules/local/kraken2_standard_report.nf
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@ -5,7 +5,7 @@ process KRAKEN2_STANDARD_REPORT {
conda "conda-forge::sed=4.7" conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }" 'docker.io/ubuntu:20.04' }"
input: input:
tuple val(meta), path(report) tuple val(meta), path(report)

2
modules/local/krona_cleanup.nf
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@ -5,7 +5,7 @@ process KRONA_CLEANUP {
conda "conda-forge::sed=4.7" conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }" 'docker.io/ubuntu:20.04' }"
input: input:
tuple val(meta), path(krona, stageAs: 'uncleaned.krona.txt') tuple val(meta), path(krona, stageAs: 'uncleaned.krona.txt')