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Fix prinseq tool selection

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James Fellows Yates 2022-05-07 06:15:15 +02:00
parent 0f651873dd
commit 3fa2181f49
1 changed files with 1 additions and 1 deletions
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2
.github/workflows/ci.yml vendored
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@ -38,7 +38,7 @@ jobs:
- "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs --shortread_clipmerge_excludeunmerged" - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs --shortread_clipmerge_excludeunmerged"
- "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs" - "--shortread_clipmerge_tool adapterremoval --shortread_clipmerge_mergepairs"
- "--shortread_complexityfilter_tool bbduk" - "--shortread_complexityfilter_tool bbduk"
- "--shortread_complexityfilter_tool prinseq" - "--shortread_complexityfilter_tool prinseqplusplus"
- "--perform_runmerging" - "--perform_runmerging"
- "--perform_runmerging --shortread_clipmerge_mergepairs" - "--perform_runmerging --shortread_clipmerge_mergepairs"
- "--shortread_complexityfilter false --perform_shortread_hostremoval" - "--shortread_complexityfilter false --perform_shortread_hostremoval"