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Update authors and remove left over comment

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James Fellows Yates 2023-03-07 11:47:54 +01:00
parent 5c8e2b492c
commit 98bc6910d5
2 changed files with 3 additions and 3 deletions
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2
nextflow.config
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@ -300,7 +300,7 @@ dag {
manifest { manifest {
name = 'nf-core/taxprofiler' name = 'nf-core/taxprofiler'
author = """nf-core community""" author = """James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark"""
homePage = 'https://github.com/nf-core/taxprofiler' homePage = 'https://github.com/nf-core/taxprofiler'
description = """Taxonomic classification and profiling of shotgun metagenomic data""" description = """Taxonomic classification and profiling of shotgun metagenomic data"""
mainScript = 'main.nf' mainScript = 'main.nf'

4
subworkflows/local/db_check.nf
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@ -63,8 +63,8 @@ def validate_db_rows(LinkedHashMap row){
def expected_headers = ['tool', 'db_name', 'db_params', 'db_path'] def expected_headers = ['tool', 'db_name', 'db_params', 'db_path']
if ( !row.keySet().containsAll(expected_headers) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid database input sheet - malformed column names. Please check input TSV. Column names should be: ${expected_keys.join(", ")}" if ( !row.keySet().containsAll(expected_headers) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid database input sheet - malformed column names. Please check input TSV. Column names should be: ${expected_keys.join(", ")}"
// valid tools specified// TIFNISIH LIST // valid tools specified
def expected_tools = [ "bracken", "centrifuge", "diamond", "kaiju", "kraken2", "krakenuniq", "malt", "metaphlan3", "motus" ] def expected_tools = [ "bracken", "centrifuge", "diamond", "kaiju", "kraken2", "krakenuniq", "malt", "metaphlan3", "motus" ]
if ( !expected_tools.contains(row.tool) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid tool name. Please see documentation for all supported profilers. Error in: ${row}" if ( !expected_tools.contains(row.tool) ) exit 1, "[nf-core/taxprofiler] ERROR: Invalid tool name. Please see documentation for all supported profilers. Error in: ${row}"
// detect quotes in params // detect quotes in params