Update gunzip

dev
James Fellows Yates 1 year ago
parent 2e980f1d15
commit dfb2e02eb3

@ -83,7 +83,7 @@
}, },
"gunzip": { "gunzip": {
"branch": "master", "branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", "git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
"installed_by": ["modules"] "installed_by": ["modules"]
}, },
"kaiju/kaiju": { "kaiju/kaiju": {

@ -5,7 +5,7 @@ process GUNZIP {
conda "conda-forge::sed=4.7" conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }" 'docker.io/ubuntu:20.04' }"
input: input:
tuple val(meta), path(archive) tuple val(meta), path(archive)

@ -3,31 +3,32 @@ description: Compresses and decompresses files.
keywords: keywords:
- gunzip - gunzip
- compression - compression
- decompression
tools: tools:
- gunzip: - gunzip:
description: | description: |
gzip is a file format and a software application used for file compression and decompression. gzip is a file format and a software application used for file compression and decompression.
documentation: https://www.gnu.org/software/gzip/manual/gzip.html documentation: https://www.gnu.org/software/gzip/manual/gzip.html
licence: ["GPL-3.0-or-later"] licence: ["GPL-3.0-or-later"]
input: input:
- meta: - meta:
type: map type: map
description: | description: |
Optional groovy Map containing meta information Optional groovy Map containing meta information
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- archive: - archive:
type: file type: file
description: File to be compressed/uncompressed description: File to be compressed/uncompressed
pattern: "*.*" pattern: "*.*"
output: output:
- gunzip: - gunzip:
type: file type: file
description: Compressed/uncompressed file description: Compressed/uncompressed file
pattern: "*.*" pattern: "*.*"
- versions: - versions:
type: file type: file
description: File containing software versions description: File containing software versions
pattern: "versions.yml" pattern: "versions.yml"
authors: authors:
- "@joseespinosa" - "@joseespinosa"
- "@drpatelh" - "@drpatelh"

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