James Fellows Yates
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87fd5f72d0
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Fix template
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1 year ago |
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James Fellows Yates
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1eb951715f
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MultiQC optimisations for DIAMOND and Falco
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1 year ago |
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James Fellows Yates
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e92196cd12
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Remove left over comment
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1 year ago |
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James Fellows Yates
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2d9dede6d4
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Improve python regex
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1 year ago |
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James Fellows Yates
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9ed384e0f2
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Collapse FALCO and FASTQC sections, move FALCO/FASTQC sections together
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1 year ago |
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James Fellows Yates
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1f1c63bb51
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Start fixing FastQC/Falco display in MultiQC
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1 year ago |
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James Fellows Yates
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5feebf8d69
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Fix linting issues
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1 year ago |
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James Fellows Yates
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01fca90496
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Tweak MultiQC config [skip ci]
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1 year ago |
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James Fellows Yates
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bdbb111344
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Turn off all profilers in generla stats
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1 year ago |
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James Fellows Yates
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a993300099
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Tweaks to MultiQC based on full test experiments
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1 year ago |
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James Fellows Yates
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92dff9b453
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Standardise file names using only underscore
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1 year ago |
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James Fellows Yates
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480248bcfd
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Deactivate all classifer columns from general stats
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1 year ago |
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James Fellows Yates
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0947e9b8ca
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Fix mOTUs issues
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1 year ago |
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James Fellows Yates
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d6fa45b500
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update MultiQC and include latest modules
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1 year ago |
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James A. Fellows Yates
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25bb4304e8
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Merge pull request #187 from nf-core/revert-pep
Revert PEP validation back to python samplesheet check
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1 year ago |
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Sofia Stamouli
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07a1cfae62
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Update assets/multiqc_config.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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5a592f086e
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Update assets/multiqc_config.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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a2c81e33fd
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Prettier
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1 year ago |
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Sofia Stamouli
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d6db04503e
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Configuration of multiqc report
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1 year ago |
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James Fellows Yates
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4b68e95770
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Revert PEP validation back to python samplesheet check
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1 year ago |
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James Fellows Yates
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1ccd0a0767
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Merge branch 'dev' into nf-core-template-merge-2.7.1
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1 year ago |
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nf-core-bot
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36f3b5723b
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Template update for nf-core/tools version 2.7.1
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1 year ago |
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Sofia Stamouli
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1bd6dbfe58
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Add samtools stats for long-reads
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2 years ago |
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Moritz E. Beber
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fdb8a7f740
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Merge branch 'devel' into nf-core-template-merge-2.6
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2 years ago |
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nf-core-bot
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51bacb00e6
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Template update for nf-core/tools version 2.6
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2 years ago |
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James A. Fellows Yates
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8b559fba86
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Pin version to get NXF to download correctly
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2 years ago |
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James Fellows Yates
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43a8aa4405
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Remove detect_reads.py and replace remaining checks with nextflow code instead
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2 years ago |
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Rafal Stepien
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768f9980d8
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Add pep_input_base_dir to workflow. Just need to update modules
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2 years ago |
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Rafal Stepien
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5f3eee9a4a
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Add working version of PEP-nf-core integration
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2 years ago |
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James A. Fellows Yates
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28d8d3f8fb
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Merge branch 'dev' into nf-core-template-merge-2.5
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2 years ago |
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nf-core-bot
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6dfca81761
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Template update for nf-core/tools version 2.5
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2 years ago |
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James Fellows Yates
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a97bb69cd2
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Prettier
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2 years ago |
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James Fellows Yates
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25bcc0798d
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Start work on multiQC config with distinguishing Kraken/Centrifuge
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2 years ago |
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nf-core-bot
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a3bcf8665a
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[automated] Fix linting with Prettier
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2 years ago |
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James A. Fellows Yates
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65ae82efc4
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Define separte krakena nd centrigfue modules
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2 years ago |
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James A. Fellows Yates
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e76b299705
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Start working getting kraken and centrifuge working in MQC
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2 years ago |
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James Fellows Yates
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77da358e87
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Separate dark and light mode logos, add to README and add to MQC report
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2 years ago |
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Moritz E. Beber
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a9fbe47992
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Merge branch 'dev' into nf-core-template-merge-2.4
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2 years ago |
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nf-core-bot
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a560492353
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Template update for nf-core/tools version 2.4
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2 years ago |
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James Fellows Yates
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b892fd0be5
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Initial attempt at docs
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2 years ago |
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nf-core-bot
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6b939e6728
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Template update for nf-core/tools version 2.3.1
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2 years ago |
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James Fellows Yates
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12e7b428f2
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initial template build from nf-core/tools, version 2.2
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2 years ago |