James Fellows Yates
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f3ac1d2a21
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Update License to match nextflow.conifg [skip ci]
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2023-03-07 14:01:09 +01:00 |
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James A. Fellows Yates
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6dbeb5913a
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Remove left over skips
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2023-03-07 13:18:58 +01:00 |
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James A. Fellows Yates
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54e8857233
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Reduce number of tests to check just each tool option is tested
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2023-03-07 13:06:32 +01:00 |
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James Fellows Yates
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98bc6910d5
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Update authors and remove left over comment
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2023-03-07 11:47:54 +01:00 |
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James Fellows Yates
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5c8e2b492c
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Syncronise local modules with other generic container modules
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2023-03-07 11:41:57 +01:00 |
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James A. Fellows Yates
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91a7a03f48
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Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2023-03-07 11:27:19 +01:00 |
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James Fellows Yates
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e92196cd12
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Remove left over comment
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2023-03-07 11:10:10 +01:00 |
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James Fellows Yates
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8ca9fad3b1
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move errorStrategy to config
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2023-03-07 11:09:25 +01:00 |
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James Fellows Yates
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b5a2983c5f
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Make modules entries consistent
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2023-03-07 11:06:35 +01:00 |
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Sofia Stamouli
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d647e61a2f
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Merge pull request #253 from nf-core/futher-further-prerelease-updates
Futher further prerelease updates: FALCO display in MultiQC
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2023-03-06 15:56:50 +01:00 |
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James Fellows Yates
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2d9dede6d4
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Improve python regex
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2023-03-06 12:59:08 +01:00 |
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James Fellows Yates
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6e64c2b5a9
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Fix copy paste error
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2023-03-06 10:50:36 +01:00 |
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James Fellows Yates
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735212c9ee
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Fix the non-updated KAIJU2TABLE name
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2023-03-06 10:47:36 +01:00 |
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James Fellows Yates
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a2a1b9cbf0
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Phrasing tweak
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2023-03-06 10:42:30 +01:00 |
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James Fellows Yates
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4938549d65
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Clarify some documentation
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2023-03-06 10:41:32 +01:00 |
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James Fellows Yates
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9ed384e0f2
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Collapse FALCO and FASTQC sections, move FALCO/FASTQC sections together
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2023-03-06 10:37:09 +01:00 |
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James Fellows Yates
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1f1c63bb51
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Start fixing FastQC/Falco display in MultiQC
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2023-03-06 09:47:26 +01:00 |
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James Fellows Yates
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a5138ed6e0
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Fix ugly warn when KAIJU2TABLE not run
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2023-03-06 08:17:50 +01:00 |
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James A. Fellows Yates
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f0f89eb082
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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2023-03-03 14:58:21 +01:00 |
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James A. Fellows Yates
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c66c67524c
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Update nextflow.config
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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2023-03-03 13:33:41 +01:00 |
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James A. Fellows Yates
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799a44cb8c
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Merge pull request #252 from nf-core/further-prerelease-changes
Further prerelease changes
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2023-03-03 10:16:23 +01:00 |
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James Fellows Yates
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6d9cdd3c78
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And the other file
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2023-03-03 09:15:21 +01:00 |
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James Fellows Yates
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5feebf8d69
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Fix linting issues
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2023-03-03 09:12:11 +01:00 |
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James Fellows Yates
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74a5343524
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Add taxpasta to tubemap
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2023-03-03 09:11:10 +01:00 |
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James A. Fellows Yates
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6c2ce4a1c9
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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2023-03-03 08:37:31 +01:00 |
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James A. Fellows Yates
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0c9d6cabe8
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Merge pull request #250 from nf-core/pre-release-updates
Cleanup PR for release
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2023-03-02 13:54:45 +01:00 |
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James Fellows Yates
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ec89187504
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Update CHANGELOG for first release
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2023-03-02 13:53:32 +01:00 |
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James Fellows Yates
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aedf0b34de
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Bump version for release
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2023-03-02 13:51:28 +01:00 |
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James Fellows Yates
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5c549e5ce3
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Remove TODOs and references to under development
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2023-03-02 13:49:03 +01:00 |
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James Fellows Yates
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a14937f668
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Remove unused module and fix module structure for samplesheet_check
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2023-03-02 13:34:10 +01:00 |
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Sofia Stamouli
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d9f687667e
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Merge pull request #249 from genomic-medicine-sweden/update_taxpasta
Update taxpasta
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2023-03-02 08:53:38 +01:00 |
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sofstam
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7ae7fb528b
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Prettier
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2023-03-01 22:17:07 +01:00 |
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sofstam
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58f09ed659
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Update taxpasta/merge module
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2023-03-01 22:12:09 +01:00 |
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Sofia Stamouli
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b93c7082b8
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Merge pull request #248 from genomic-medicine-sweden/update_taxpasta_merge
Update taxpasta/merge to version 0.2.0 and add taxonomy argument
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2023-02-27 15:19:58 +01:00 |
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Sofia Stamouli
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df5303270d
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 14:18:30 +01:00 |
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Sofia Stamouli
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fff7453d0c
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 14:18:22 +01:00 |
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Sofia Stamouli
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9621d34c4a
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 14:18:11 +01:00 |
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Sofia Stamouli
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54af021965
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 14:18:01 +01:00 |
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sofstam
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99fe8adb1b
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Add helptext
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2023-02-27 13:49:02 +01:00 |
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sofstam
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c94bfb0cf1
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Fix prettier
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2023-02-27 13:09:07 +01:00 |
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sofstam
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4dea308c22
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Linting
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2023-02-27 11:34:19 +01:00 |
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Sofia Stamouli
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69430ef851
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Update nextflow.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 11:02:55 +01:00 |
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Sofia Stamouli
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e3e465df1f
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 11:00:59 +01:00 |
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Sofia Stamouli
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d454ceed86
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 11:00:42 +01:00 |
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Sofia Stamouli
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1aef73cda8
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 10:39:44 +01:00 |
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Sofia Stamouli
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d96e0a17a5
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Update conf/modules.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-02-27 10:39:10 +01:00 |
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sofstam
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489650feb8
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Linting
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2023-02-27 10:24:14 +01:00 |
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sofstam
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2f0c68a833
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Last review suggestions
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2023-02-27 10:15:42 +01:00 |
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sofstam
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78d7001bea
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Document the taxonomy parameters
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2023-02-24 16:53:49 +01:00 |
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sofstam
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a7ae57c94e
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Fix linting
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2023-02-24 15:53:54 +01:00 |
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