sofstam
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e5bb627402
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Apply review suggestions
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2022-12-01 11:12:31 +01:00 |
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nf-core-bot
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8067012c01
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[automated] Fix linting with Prettier
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2022-12-01 09:15:35 +00:00 |
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sofstam
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933b820c19
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Apply review suggestions
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2022-11-29 16:57:07 +01:00 |
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Sofia Stamouli
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e85c75dcba
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Merge branch 'dev' into update_motus
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2022-11-29 15:12:31 +01:00 |
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sofstam
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12dd836e9c
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Fix conflict
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2022-11-29 15:00:27 +01:00 |
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sofstam
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f389029848
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Fix merge conflic
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2022-11-29 14:38:39 +01:00 |
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Sofia Stamouli
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7e3ece53bd
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Update modules.config
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2022-11-29 13:31:00 +01:00 |
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Sofia Stamouli
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0088b07220
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Fix trailing whitespace
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2022-11-29 13:28:04 +01:00 |
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James A. Fellows Yates
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770a35d7ac
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Update conf/modules.config
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2022-11-29 12:49:20 +01:00 |
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Sofia Stamouli
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ba727a81ae
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Fix left-padding spaces
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2022-11-29 12:45:14 +01:00 |
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Sofia Stamouli
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71b52b9c94
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Apply review suggestions
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2022-11-29 11:58:23 +01:00 |
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James A. Fellows Yates
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3d949a803f
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Merge pull request #175 from nf-core/schema-clean
Fix schema location ofr fastqc/falco option
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2022-11-29 11:49:27 +01:00 |
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Sofia Stamouli
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fb6be69d7e
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Prettier should work now
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2022-11-29 11:37:20 +01:00 |
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sofstam
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644a29c699
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Prettier
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2022-11-29 11:34:57 +01:00 |
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sofstam
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5254b8d679
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Prettier
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2022-11-29 11:25:52 +01:00 |
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sofstam
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0235ef42ca
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Update nextflow_schema.json
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2022-11-29 11:15:40 +01:00 |
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sofstam
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49af33f68e
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Include NCBI_id, read counts and mgc arguments in motus
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2022-11-29 11:07:29 +01:00 |
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James Fellows Yates
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d6c0ebb4c6
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Prettier
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2022-11-29 10:14:33 +01:00 |
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James Fellows Yates
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f13185d98b
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Fix schema location ofr fastqc/falco option
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2022-11-29 10:13:46 +01:00 |
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Sofia Stamouli
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f8b769a8f0
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Merge pull request #172 from genomic-medicine-sweden/update_samtools_stats
Include the mapped reads in samtools stats
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2022-11-23 10:21:47 +01:00 |
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sofstam
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481f90589c
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Apply review suggestions
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2022-11-23 09:08:22 +01:00 |
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Moritz E. Beber
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b6f5930b49
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Merge pull request #171 from nf-core/chore-fail-slow
chore: let all tests run to completion
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2022-11-22 19:22:14 +01:00 |
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sofstam
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30af26a8b3
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Include the mapped reads in samtools stats
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2022-11-22 16:50:50 +01:00 |
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Moritz E. Beber
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6b538d658a
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chore: let all tests run to completion
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2022-11-22 10:13:10 +01:00 |
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James A. Fellows Yates
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10c72f1265
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Merge pull request #169 from nf-core/diagram-update
Update tubemap to include samtools stats
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2022-11-06 10:15:56 +01:00 |
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James Fellows Yates
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f414f5dc9c
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Add falco to tube map
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2022-11-04 18:20:44 +01:00 |
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James Fellows Yates
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4275640d9b
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update tubemap to include samtools stats
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2022-11-04 15:24:15 +01:00 |
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James A. Fellows Yates
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67e264b7a9
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Merge pull request #162 from genomic-medicine-sweden/short_reads_samtools
Add samtools stats for short-reads
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2022-11-04 14:39:29 +01:00 |
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Sofia Stamouli
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696edfb866
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Apply prettier
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2022-11-04 12:05:23 +01:00 |
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Sofia Stamouli
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d2195e9eda
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Merge branch 'dev' into short_reads_samtools
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2022-11-04 11:47:36 +01:00 |
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Sofia Stamouli
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79dd3930bb
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Add samtools to README
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2022-11-03 16:52:01 +01:00 |
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Sofia Stamouli
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b5e6639f9d
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Apply review suggestions
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2022-11-03 14:12:05 +01:00 |
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James A. Fellows Yates
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bc671c547d
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Merge pull request #165 from genomic-medicine-sweden/fix_porechop_conflict
Fix porechop conflict
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2022-11-03 14:08:13 +01:00 |
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James A. Fellows Yates
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1f31f88635
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Merge pull request #158 from nf-core/adapterremoval-fix
Fix adapterremoval adapter conflict and add optional adapter list file
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2022-11-03 11:36:14 +01:00 |
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James A. Fellows Yates
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62f45c8be7
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Update nextflow.config
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2022-11-03 10:03:27 +01:00 |
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James A. Fellows Yates
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24dc2a2cec
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2022-11-03 10:03:07 +01:00 |
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James Fellows Yates
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d487a1ff2f
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Addd FASTP adadapter list
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2022-11-02 12:39:34 +01:00 |
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Sofia Stamouli
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e4307ad8ab
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Change modules.config to include porechop_porechop
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2022-11-01 20:50:42 +01:00 |
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Sofia Stamouli
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3faea8aac5
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Fix porechop conflict
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2022-11-01 17:34:37 +01:00 |
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Sofia Stamouli
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0e0c55d3b0
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Update modules.config
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2022-10-31 12:35:51 +01:00 |
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Sofia Stamouli
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a4b5fa9f57
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Fix trailing space
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2022-10-31 12:17:49 +01:00 |
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Sofia Stamouli
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1d1047374b
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Fix EditorConfig format
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2022-10-31 12:09:25 +01:00 |
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Sofia Stamouli
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074d3ec204
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Merge pull request #161 from genomic-medicine-sweden/samtools_stats
Add samtools stats for long-reads
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2022-10-31 10:59:37 +01:00 |
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Sofia Stamouli
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ce611d6efd
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Add bowtie2 mapped reads
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2022-10-31 10:04:51 +01:00 |
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Sofia Stamouli
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f1778acf35
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Apply review suggestion
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2022-10-31 09:31:13 +01:00 |
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Sofia Stamouli
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c4a7d094c8
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Fix EditorConfig check
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2022-10-28 14:33:44 +02:00 |
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Sofia Stamouli
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5b99d9024a
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Add samtools stats for short-reads
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2022-10-28 14:24:33 +02:00 |
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Sofia Stamouli
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f87131c7b1
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Save samtools stats output
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2022-10-28 14:10:24 +02:00 |
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Sofia Stamouli
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1bd6dbfe58
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Add samtools stats for long-reads
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2022-10-28 11:40:50 +02:00 |
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Moritz E. Beber
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bf89525bc2
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Merge pull request #146 from nf-core/feat-bracken
add Bracken to the profiling workflow
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2022-10-27 17:35:06 +02:00 |
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