millironx
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XAM.jl
mirror of https://github.com/MillironX/XAM.jl
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master
feature/BioAlignmentsv2.2
operations-fix
alnpos-compat
gh-pages
hotfix/issue-31
hotfix/issue-31-virtualoffset
hotfix/issue-31-virtualoffset2
hotfix/issue-31-tryread
hotfix/issue-31-eof
pu/v0.3.0
compathelper/new_version/2021-04-29-00-03-02-365-4269583037
compathelper/new_version/2021-04-02-02-40-39-288-122334684
feature/CodecBGZF-issue-31
feature/CodecBGZF
hotfix/issue-34
hotfix/field_access
develop-2020-08-13-0406
workaround_23
release/v0.2.5
v0.2.4
v0.2.3
v0.2.1
v0.2.0
v0.1.1
v0.1.0
v0.2.2
v0.2.5
v0.2.6
v0.2.7
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Commit Graph

139 Commits (develop)
 

Author SHA1 Message Date
Ciarán O'Mara 8702799593 Increment version 4 years ago
Ciarán O'Mara 2aaab4d9ab Merge branch 'feature/transcodingstreams' into develop 4 years ago
Ciarán O'Mara de56faf066 Migrate from BufferedStreams to TranscodingStreams 4 years ago
Ciarán O'Mara 12db2c4ea8 Align emission symbols for TranscodingStreams 4 years ago
Ciarán O'Mara 6cd89aba08 Move isinteractive into machine 4 years ago
Ciarán O'Mara 892ad0d7dc Pipe into eval 4 years ago
Ciarán O'Mara e63ce2e398 Group Automa into readrecord.jl 4 years ago
Ciarán O'Mara 365f7922fa Quick fix for BioGenerics.ReaderHelper functions 
This fix is likely to be replaced when migrating to TranscodingStreams.
 4 years ago
Ciarán O'Mara c59a157675 Quick fix for BioCore.Ragel.State 
This fix is likely to be replaced when migrating to TranscodingStreams.
 4 years ago
Ciarán O'Mara 2cad552f63 Quick fix for BioCore.RecordHelper: unsafe_parse_decimal 4 years ago
Ciarán O'Mara c4f3c4b0df Migrate to BioGenerics 
Basic find and replace.
 4 years ago
Ciarán O'Mara e8ad60b086 Use accessor functions 4 years ago
Ciarán O'Mara b0069d6f27 Preallocate 4 years ago
Ciarán O'Mara 789cccbaff Flatten elseif 4 years ago
Ciarán O'Mara ef99c70317 Flatten returns 4 years ago
Ciarán O'Mara 7a4d6d143d Merge branch 'master' into develop 4 years ago
Ciarán O'Mara 5aca5f0011 Merge branch 'hotfix/SAM' 4 years ago
Ciarán O'Mara f272b41031 Flatten 4 years ago
herbstk 6a33ac06a7 ✅ Enhanced unit test for rightposition (#37) 
Added additional tests for SAM.Record and BAM.Record for `rightposition` (and implicitly `alignlength`).
 4 years ago
Konrad Herbst 8d14563f9d 🐛 Fix SAM.alignlength(record::Record)::Int (#37) 
Fixes issue #37 by re-initializing `len` in `SAM.alignlength`.
 4 years ago
Ciarán O'Mara 6f03bef623 Increment version 4 years ago
Ciarán O'Mara 406d290b13 Merge branch 'master' into develop 4 years ago
Ciarán O'Mara 109f25bd52 Merge branch 'release/v0.1.0' 4 years ago
Ciarán O'Mara 085a724b4f Update project status 4 years ago
Ciarán O'Mara 1bcd7c344c Documentation 
- API autodocs.
- Inline links for documenter.
- Logo.
- Badges.
 4 years ago
Ciarán O'Mara 30a9911e58 Documentation roundup 4 years ago
Ciarán O'Mara bf835d9ff0 Add documentation workflow 4 years ago
Ciarán O'Mara 4b0a8a6644 Add TagBot workflow 4 years ago
Ciarán O'Mara 514e2c901d Add funding 4 years ago
Ciarán O'Mara 2df146b8fc Use FormatSpecimens 4 years ago
Ciarán O'Mara 1a3c986152 Minimal code adjustments for working separation 
- Update to use GenomicFeatures v2.
- BioAlignments v2.
- BioSequences v2.
- Indexes v0.1.
 4 years ago
Ciarán O'Mara 7a56931b90 Naive code roundup 4 years ago
Ciarán O'Mara 282d80a758 Continuous Integration 4 years ago
Ciarán O'Mara b2ec340474 CompatHelper workflow 4 years ago
Ciarán O'Mara 78d2329f70 Add .github templates 4 years ago
Ciarán O'Mara 17ea000940 Add original authors 4 years ago
Ciarán O'Mara 07c0f925e6 Generated files 4 years ago
Ciarán O'Mara c8d7ea0524 Brief description 4 years ago
Ciarán O'Mara a8133f4316 Initial commit 4 years ago