millironx/cowcalf-rumen-metagenomic-pipeline
1
0
Fork 0
mirror of https://github.com/MillironX/cowcalf-rumen-metagenomic-pipeline.git synced 2024-12-21 17:08:18 +00:00
Code Issues Releases Packages Activity

Correct rarefaction instructions in README

Browse source
This commit is contained in:
Thomas A. Christensen II 2021-04-21 12:34:59 -06:00
parent 8c785a5926
commit bbc3f91d56
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 2 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
README.md
View file

@ -37,9 +37,8 @@ git clone https://github.com/MillironX/cowcalf-rumen-metagenomic-pipeline.git
Create a directory with all forward- and reverse- read files in it, named as
`<SAMPLEID>_R1_001.fastq.gz` for forward-reads and `<SAMPLEID>_R2_001.fastq.gz`
for reverse-reads. Add a [QIIME2-compatible metadata file][qiime2-metadata]
named `metadata.tsv`, text files containing the minimum and maximum rarefaction
values names `rarefaction.min.txt` and `rarefaction.max.txt` and copy all of the
code files into it. It should look like
named `metadata.tsv`, and copy all of the code files into it. It should look
like
```plaintext
.
@ -51,8 +50,6 @@ code files into it. It should look like
├── sampleN_R1_001.fastq.gz
├── sampleN_R2_001.fastq.gz
├── metadata.tsv
├── rarefaction.min.txt
├── rarefaction.max.txt
├── main.sh
├── fastq-to-taxonomy.sh
├── manipulatefeaturetable.R