feat: Add ViQuas module

2023-08-09 16:07:54 -05:00 · 2023-08-09 16:07:54 -05:00 · 1e20488409
commit 1e20488409
parent 108fb0dc5b
1 changed files with 20 additions and 0 deletions
--- a/modules/viquas/main.nf
+++ b/modules/viquas/main.nf
@ -0,0 +1,20 @@
+process VIQUAS {
+    tag "${prefix}"
+    label 'process_high'
+
+    input:
+    tuple val(prefix), path(bam)
+    path(reference)
+
+    output:
+    tuple val(prefix), path("*.fa")
+
+    publishDir "results/viquas", mode: 'copy'
+
+    script:
+    """
+    viquas \\
+        ${reference} \\
+        ${bam}
+    """
+}