2021-08-31 11:58:39 +00:00
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
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config_profile_url = 'https://www.computerome.dk/'
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2021-09-10 13:10:19 +00:00
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project = null
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2021-09-15 12:20:02 +00:00
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cache_dir = "/home/projects/$params.project/scratch"
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2021-09-15 17:54:51 +00:00
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schema_ignore_params = "project,cache_dir,genomes,modules"
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2021-09-13 06:36:30 +00:00
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2021-09-13 11:28:33 +00:00
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//Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
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max_memory = 1500.GB
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2021-09-13 06:36:30 +00:00
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max_cpus = 40
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2021-09-13 11:28:33 +00:00
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//There is no max walltime on the cluster, but a week seems sensible if not directly specified
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max_time = 168.h
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2021-08-31 11:58:39 +00:00
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}
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singularity {
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enabled = true
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autoMounts = true
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2021-09-13 12:22:22 +00:00
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cacheDir = params.cache_dir
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2021-08-31 11:58:39 +00:00
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}
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process {
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2021-09-15 08:22:57 +00:00
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beforeScript = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir"
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2021-08-31 11:58:39 +00:00
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executor = 'pbs'
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2021-09-13 11:20:57 +00:00
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queueSize = 2000
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2021-09-15 08:22:57 +00:00
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clusterOptions = "-A $params.project -W group_list=$params.project"
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2021-09-13 11:28:33 +00:00
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}
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