mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-10 20:13:09 +00:00
Delete imperial_mb.config
Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config
This commit is contained in:
parent
fe5474a029
commit
e1d0bf0cd2
1 changed files with 0 additions and 44 deletions
|
@ -1,44 +0,0 @@
|
||||||
//Profile config names for nf-core/configs
|
|
||||||
|
|
||||||
params {
|
|
||||||
// Config Params
|
|
||||||
config_profile_description = 'Imperial College London - MEDBIO QUEUE - HPC Profile -- provided by nf-core/configs.'
|
|
||||||
config_profile_contact = 'NA'
|
|
||||||
config_profile_url = 'https://www.imperial.ac.uk/bioinformatics-data-science-group/resources/uk-med-bio/'
|
|
||||||
|
|
||||||
// Resources
|
|
||||||
max_memory = 640.GB
|
|
||||||
max_cpus = 32
|
|
||||||
max_time = 168.h
|
|
||||||
}
|
|
||||||
|
|
||||||
executor {
|
|
||||||
$pbspro {
|
|
||||||
queueSize = 50
|
|
||||||
}
|
|
||||||
|
|
||||||
$local {
|
|
||||||
cpus = 2
|
|
||||||
queueSize = 1
|
|
||||||
memory = '32 GB'
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
singularity {
|
|
||||||
enabled = true
|
|
||||||
autoMounts = true
|
|
||||||
runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
|
|
||||||
}
|
|
||||||
|
|
||||||
process {
|
|
||||||
|
|
||||||
executor = 'pbspro'
|
|
||||||
queue = 'pqmedbio-tput'
|
|
||||||
|
|
||||||
//queue = 'med-bio' //!! this is an alias and shouldn't be used
|
|
||||||
|
|
||||||
//withLabel:process_large {
|
|
||||||
//queue = 'pqmedbio-large' //!! this queue is unavailable as of Feb 2022
|
|
||||||
//}
|
|
||||||
|
|
||||||
}
|
|
Loading…
Reference in a new issue