millironx/nf-configs
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Author SHA1 Message Date
Athanasios Baltzis
002fc84362 Add crg custom config file and update nfcore_custom.config 2022-10-20 18:41:40 +02:00
Athanasios Baltzis
d2e82e4fd2 Add profile to main.yml 2022-10-20 18:15:51 +02:00
Athanasios Baltzis
7547fba92e Add proteinfold-specific CRG config 2022-10-20 18:00:14 +02:00
Alexander Peltzer
c40faeb95e
Merge pull request #312 from nf-core/kevbrick-patch-1 
Update nihbiowulf.config - set standard profile to slurm
 2022-10-19 10:56:29 +02:00
Alexander Peltzer
add5fc458a
Merge pull request #264 from bwlang/varskip_designs 
adds varskip primer designs
 2022-10-19 10:55:54 +02:00
Alexander Peltzer
c2710b1b63
Merge branch 'master' into varskip_designs 2022-10-19 10:42:00 +02:00
Alexander Peltzer
211a1bcb73
Merge branch 'master' into kevbrick-patch-1 2022-10-19 10:41:41 +02:00
Alexander Peltzer
1fe5d5d024
Merge pull request #352 from ajodeh-juma/gis-branch 
add gis.md documentation
 2022-10-19 10:41:12 +02:00
Alexander Peltzer
cdc095c4f1
Merge branch 'master' into gis-branch 2022-10-19 10:38:51 +02:00
Alexander Peltzer
7a24bb8d45
Merge pull request #429 from chriswyatt1/ucl_myriad 
Ucl_myriad
 2022-10-19 10:35:40 +02:00
chriswyatt1
f4c13e6511 fix_trainling_nl 2022-10-18 14:10:55 +00:00
chriswyatt1
9b971c2b76 Ucl_myriad 2022-10-18 14:03:07 +00:00
Matthias De Smet
9a1e629b7b
Merge pull request #428 from nf-core/vsc_ugent/limit_queuesize 
vsc_ugent: limit queuesize
 2022-10-13 08:53:27 +02:00
Matthias De Smet
adbf728ce5
vsc_ugent: limit queuesize 2022-10-13 07:54:30 +02:00
Maxime U. Garcia
62a2860b0d
Merge pull request #427 from nf-core/praveenraj2018-patch-1 
Disable mounting of KI lab folders
 2022-10-10 16:41:55 +02:00
Maxime U. Garcia
6e2a24bdd6
Merge pull request #426 from Aratz/master 
Update UPPMAX documentation
 2022-10-10 16:39:58 +02:00
Adrien Coulier
278ae391a0
Apply suggestions from code review 
replace `nf-tools` by `nf-core`

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
 2022-10-10 16:21:47 +02:00
Adrien Coulier
ec8d67285a Run prettier 2022-10-10 16:03:39 +02:00
Praveen Raj S
f200f6ab44
Disable mounting of KI lab folders 
Do not mount KI lab folders. The drives are not used anymore.
 2022-10-10 16:01:22 +02:00
Adrien Coulier
fb17e0c7f4 Explain how to install nf-core through modules 
fixes #345
 2022-10-10 15:35:58 +02:00
Edmund Miller
5c65e69941
Merge pull request #424 from nf-core/demux-awstower 
feat(demultiplex): Add optimized transfers for bases2fastq
 2022-10-05 23:01:40 +00:00
Edmund Miller
33708acdc5
docs(demultiplex): Add aws_tower docs 2022-10-05 17:21:23 -05:00
Edmund Miller
0cabf67b61
feat(demultiplex): Add optimized transfers for bases2fastq 2022-10-05 17:21:23 -05:00
Phil Ewels
62d4e0d06b
Merge pull request #425 from sheffield-bioinformatics-core/sbc_sharc 
Updates to sbc_sharc configs
 2022-10-05 21:21:14 +02:00
Lewis Quayle
755862fc61
Merge branch 'nf-core:master' into sbc_sharc 2022-10-05 19:55:43 +01:00
Alexander Peltzer
540add8238
Merge pull request #422 from giusmar/master 
Add TIGEM config file
 2022-10-05 16:40:24 +02:00
Alexander Peltzer
e2146b5905
Update docs/tigem.md 2022-10-05 09:59:07 +02:00
Giuseppe Martone
64fec62a6d
Merge branch 'master' into master 2022-10-04 22:59:17 +02:00
Giuseppe Martone
e37bccc9d8
Update tigem.config 2022-10-04 22:58:50 +02:00
Giuseppe Martone
baf857654c
Update tigem.md 2022-10-04 22:28:38 +02:00
Alexander Peltzer
8e217589b7
Merge branch 'master' into gis-branch 2022-10-04 21:59:27 +02:00
Alexander Peltzer
34441a8f82
Update docs/gis.md 2022-10-04 21:59:19 +02:00
Alexander Peltzer
a9781042c7
Merge pull request #392 from nf-core/custom-mag-eva 
Fix python related seg faults mag@eva
 2022-10-04 21:58:49 +02:00
Alexander Peltzer
0d8471a082
Merge pull request #421 from Puumanamana/master 
University of Hawaii at Manoa's HPCC config
 2022-10-04 21:56:40 +02:00
Alexander Peltzer
8b68ffce89
Merge branch 'master' into custom-mag-eva 2022-10-04 21:55:37 +02:00
nf-core-bot
cade84aacd [automated] Fix linting with Prettier 2022-10-04 19:50:51 +00:00
Phil Ewels
7556391c97
Merge pull request #423 from marchoeppner/ccga_beegfs_update 
Updating CCGA med to use the new Beegfs file system
 2022-10-04 14:31:19 +02:00
Phil Ewels
e78d941105
Merge branch 'master' into ccga_beegfs_update 2022-10-04 14:18:51 +02:00
Marc Hoeppner
e5b798e21f Updating CCGA med to use the new Beegfs file system 2022-10-04 14:07:44 +02:00
Giuseppe Martone
5758687a09
Update main.yml 2022-10-04 11:07:36 +02:00
Giuseppe Martone
a4244eb346
Update README.md 2022-10-04 11:06:26 +02:00
Giuseppe Martone
bde7502ed2
Update nfcore_custom.config 2022-10-04 10:54:13 +02:00
Giuseppe Martone
2479c1e7e8
Update tigem.md 2022-10-04 10:53:27 +02:00
Giuseppe Martone
da0482a904
Create tigem.md 2022-10-04 10:52:50 +02:00
Giuseppe Martone
ce39096f32
Create tigem.config 2022-10-04 10:44:19 +02:00
lquayle88
584052cfff Revised base and all pipeline configs to provide memory on per core basis 2022-10-04 09:12:29 +01:00
lquayle88
3f2ffa314d Revised base and sarek configs to provide memory on per core basis 2022-10-04 00:25:16 +01:00
Cedric
2825f33ded
conda env setup improvement 2022-10-02 19:15:59 -10:00
Cedric
d429a59a0d
add automounts for singularity 2022-10-02 18:44:22 -10:00
Cedric Arisdakessian
e89cb7bd5e fix indentation 2022-10-03 03:49:04 +00:00