Edmund Miller
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14a2106c63
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fix(sysbio): Move rnaseq specific things to pipeline config
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2021-06-17 08:14:48 -05:00 |
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Edmund Miller
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7ff1c6cc7d
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ci: Add sysbio
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2021-06-16 21:19:49 -05:00 |
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Edmund Miller
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2a958f5ce3
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docs: Add sysbio
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2021-06-16 21:19:38 -05:00 |
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Edmund Miller
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472082254a
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fix(sysbio): Add Star resources
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2021-06-16 21:18:48 -05:00 |
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Edmund Miller
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b11f137901
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fix(sysbio): Leave igenomes unfinished
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2021-06-16 21:18:28 -05:00 |
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Edmund Miller
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04d0b27e81
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fix(sysbio): Reduce memory on high processes
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2021-06-16 21:17:40 -05:00 |
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Edmund Miller
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2b58a62a9b
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feat(utd): Add initial sysbio config
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2021-06-11 14:50:58 -05:00 |
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Gisela Gabernet
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9cca0eaf85
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Merge pull request #250 from ggabernet/master
cfc config
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2021-06-11 15:05:16 +02:00 |
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ggabernet
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c3385593cb
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revert cfc config
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2021-06-11 14:59:09 +02:00 |
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Gisela Gabernet
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1f45b9c297
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Merge pull request #249 from nf-core/mseybold-patch-1
Update cfc.config
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2021-06-11 14:42:37 +02:00 |
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mseybold
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f196de8246
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Update cfc.config
singularity is now installed natively on the nodes, so no more need for a module here
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2021-06-10 12:34:58 +02:00 |
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James A. Fellows Yates
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756f067213
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Merge pull request #248 from jfy133/eva
Fix MakeSeqDict eager @ eva
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2021-06-07 13:26:05 +02:00 |
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James A. Fellows Yates
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da8e002969
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Merge pull request #247 from jfy133/shh-fx
Fix eageR@SHH HOPS profile human ref path
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2021-06-07 10:55:01 +02:00 |
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James A. Fellows Yates
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fc8b1162c1
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Fix HOPS huamn ref path
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2021-06-07 10:48:35 +02:00 |
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James A. Fellows Yates
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5bf57894a5
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Merge pull request #246 from jfy133/shh-update
Make eager@SHH big_data go by default to medium via run time
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2021-06-04 12:32:28 +02:00 |
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James A. Fellows Yates
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31d46cb0a9
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Make big_data go by default to medium via run time
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2021-06-04 12:22:54 +02:00 |
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Øyvind Almelid
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c75ceec35d
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Merge pull request #244 from oalmelid/master
eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
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2021-05-25 10:03:05 +01:00 |
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Øyvind Almelid
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f6578f727d
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Add TMPDIR and mount for it to singularity configuration
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2021-05-25 09:54:08 +01:00 |
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Olga Botvinnik
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2ac4693421
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Merge pull request #243 from nf-core/olgabot-patch-1
executor.cli --> aws.batch.cliPath
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2021-05-20 10:34:55 -07:00 |
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Maxime U. Garcia
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483e24aab6
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Merge pull request #242 from maxulysse/master_munin
feat: update owner of munin profile
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2021-05-20 10:08:32 +02:00 |
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MaxUlysse
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05548bdb75
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fix: forgotten }
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2021-05-20 09:37:48 +02:00 |
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Olga Botvinnik
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8166e0f606
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executor.cli --> aws.batch.cliPath
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2021-05-19 13:36:15 -07:00 |
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MaxUlysse
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73fcc4495a
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feat: update owner of profile
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2021-05-19 20:46:52 +02:00 |
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Phil Ewels
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9c4830c8d5
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Merge pull request #238 from nf-core/hebbe-config-fix
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2021-05-19 17:46:52 +02:00 |
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James A. Fellows Yates
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3bcd55966d
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Update eva.config
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2021-05-05 11:39:33 +02:00 |
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James A. Fellows Yates
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f2413553a3
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Merge pull request #240 from jfy133/shh
eager@SHH Add additional retry allowance for silly big data in markdups
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2021-05-05 10:52:58 +02:00 |
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James A. Fellows Yates
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a849fe991c
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Add additional retry allowance for silly big data in markdups
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2021-05-04 21:43:19 +02:00 |
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Maxime U. Garcia
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77bd7f567f
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Merge pull request #228 from asafpr/master
updated jax resources
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2021-05-02 14:47:19 +02:00 |
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Phil Ewels
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76b62b478d
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Fix hebbe withName regex
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2021-04-29 23:06:56 +02:00 |
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Barry digby
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24a4119e43
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memory test
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2021-04-29 14:24:57 +01:00 |
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Barry digby
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aeb0346cce
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.
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2021-04-28 20:14:32 +01:00 |
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Barry digby
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8340e89768
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nuig.config first commit
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2021-04-28 17:28:01 +01:00 |
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Phil Ewels
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fb40b27eab
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Merge pull request #237 from maxulysse/master_opengraph
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2021-04-26 17:23:08 +02:00 |
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MaxUlysse
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867e1aff61
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feat: remove social preview image to use GitHub OpenGraph
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2021-04-26 12:41:56 +02:00 |
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Alexander Peltzer
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c12c373969
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Merge pull request #235 from aunderwo/cambridge
Add Cambridge University HPC config
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2021-04-25 10:40:56 +02:00 |
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Alexander Peltzer
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d624313abd
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Merge pull request #236 from aunderwo/sanger
Add Sanger to README
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2021-04-25 10:40:41 +02:00 |
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Anthony Underwood
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e1b1402f50
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Add Cambridge to README
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2021-04-24 13:22:54 +01:00 |
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Anthony Underwood
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5aadc5ec0e
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Add Sanger to README
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2021-04-24 13:21:19 +01:00 |
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FriederikeHanssen
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9cf19d5246
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Merge pull request #210 from FriederikeHanssen/cfc_sarek
Cfc sarek
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2021-04-23 17:22:01 +02:00 |
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Gisela Gabernet
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4e9e5d2c67
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Merge branch 'master' into cfc_sarek
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2021-04-23 16:47:04 +02:00 |
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Anthony Underwood
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b660cb7c09
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Merge pull request #234 from aunderwo/sanger
Add a Sanger config and documentation
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2021-04-22 16:41:33 +01:00 |
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Anthony Underwood
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982d1a8f2a
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Fix markdown linting
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2021-04-22 16:41:05 +01:00 |
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Anthony Underwood
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29dcc160e3
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Create cambridge.md
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2021-04-22 16:04:29 +01:00 |
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Anthony Underwood
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8b3951b244
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Create cambridge.config
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2021-04-22 16:00:37 +01:00 |
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Anthony Underwood
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3e8f9b3d4e
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Remove blank lines
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2021-04-22 15:57:09 +01:00 |
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Anthony Underwood
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f414446a88
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Add info on how to load Singularity into your path
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2021-04-22 15:38:36 +01:00 |
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Anthony Underwood
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b16b011bcc
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Add ~/bin as recommended location for nextflow executable
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2021-04-22 12:02:11 +01:00 |
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Anthony Underwood
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351c5773f0
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Add queue limits for 'normal'
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2021-04-22 11:59:34 +01:00 |
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Anthony Underwood
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fa267c0cf9
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Add sanger to tests
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2021-04-21 21:01:25 +01:00 |
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Anthony Underwood
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6175362049
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Add sanger profile
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2021-04-21 20:47:48 +01:00 |
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