Gwenna Breton
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2740b5efbf
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Update docs/medair.md
Fixed typo
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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2022-08-08 16:08:05 +02:00 |
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Gwenna Breton
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648025c1ce
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Clarified where to store singularity images
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2022-08-08 16:04:21 +02:00 |
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Gwenna Breton
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6aa78833c3
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Merge branch 'master' into medair
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2022-08-01 16:46:55 +02:00 |
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James A. Fellows Yates
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0b47849532
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Update mpcdf.config
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2022-07-27 14:23:29 +02:00 |
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Alexander Peltzer
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36487c8c25
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Merge pull request #399 from nf-core/sanger
Sanger
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2022-07-20 16:51:46 +02:00 |
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Matthieu Muffato
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dda1d810b1
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Latest stable version (rather than an edge one)
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2022-07-20 14:35:39 +01:00 |
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Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
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Priyanka Surana
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58508c4fbc
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Sanger profile update
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2022-07-20 13:14:42 +01:00 |
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Maxime U. Garcia
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a02bd46617
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Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent
lower submission rate for vsc_ugent
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2022-07-14 16:03:46 +02:00 |
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Nicolas Vannieuwkerke
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f40825ac14
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lower submission rate for vsc_ugent
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2022-07-14 15:50:50 +02:00 |
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Alexander Peltzer
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c6d59bf633
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Merge pull request #396 from drpatelh/nextclade
Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-12 10:19:15 +02:00 |
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Harshil Patel
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2ab126fa4d
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Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-11 18:28:41 +01:00 |
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Gwenna Breton
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6b9cdc8ef3
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Added info about Sentieon singularities
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2022-07-07 14:24:15 +02:00 |
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Gwenna Breton
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4538e8aa36
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Update medair.config
- added path to singularity image for Sentieon
- harmonized alignment
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2022-07-07 13:41:42 +02:00 |
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Gwenna Breton
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746db14d47
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Update medair.md
- updated text about storing singularity images
- updated text about using profiles
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2022-07-07 11:42:46 +02:00 |
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Gwennid
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b6e2d03a02
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Added Singularity cache dir
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2022-07-06 13:59:35 +02:00 |
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Gwennid
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96fd2bf217
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Fixed formatting
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2022-07-06 11:42:05 +02:00 |
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Gwenna Breton
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1d13dd9fbc
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Changed where cgg-it is mentioned
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2022-07-06 11:24:03 +02:00 |
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Gwenna Breton
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235097e58e
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Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
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2022-07-06 11:20:59 +02:00 |
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Gwenna Breton
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1d7a34b11f
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Removed comment about internal doc
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2022-07-06 11:17:58 +02:00 |
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Gwenna Breton
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b202ad70ac
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Removed mention of specific module versions
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2022-07-06 11:16:38 +02:00 |
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James A. Fellows Yates
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08435ca300
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Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
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2022-07-04 13:42:13 +02:00 |
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James A. Fellows Yates
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a141ff626b
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Merge branch 'master' into eva-java-correction
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2022-07-04 13:35:50 +02:00 |
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Gwenna Breton
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b3a6e199ca
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Merge branch 'nf-core:master' into medair
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2022-07-01 17:02:56 +02:00 |
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Maxime U. Garcia
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49e779e337
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Merge pull request #394 from nvnieuwk/vsc-ugent-fix
Vsc ugent fix for job-intensive pipelines
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2022-07-01 16:26:41 +02:00 |
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Nicolas Vannieuwkerke
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8a74c517d4
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Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix
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2022-07-01 16:16:22 +02:00 |
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Nicolas Vannieuwkerke
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1e34595280
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removed queue size limit
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2022-07-01 16:16:18 +02:00 |
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nvnieuwk
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5ff845cde7
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Merge branch 'master' into vsc-ugent-fix
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2022-07-01 16:10:45 +02:00 |
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Nicolas Vannieuwkerke
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fa949a069e
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added queuesize
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2022-07-01 16:01:19 +02:00 |
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Nicolas Vannieuwkerke
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abfa3f47f4
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lowered the job submit rate of vsc_ugent
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2022-07-01 15:55:44 +02:00 |
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Gwenna Breton
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84174043e4
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Added details for nf-core pipelines download
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2022-06-30 16:41:50 +02:00 |
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Gwenna Breton
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2398110ea5
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Added info on dowloading pipelines
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2022-06-30 14:24:17 +02:00 |
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Gwenna Breton
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22f73b06f9
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Updated info about the different profiles
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2022-06-30 12:00:05 +02:00 |
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Gwenna Breton
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77dba3256a
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Add profile name to test scope
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2022-06-30 11:53:02 +02:00 |
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Gwenna Breton
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abccece8a3
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Added medair config file to the list
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2022-06-30 11:49:47 +02:00 |
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Gwenna Breton
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77017e877a
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Added medair configuration docs to the list
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2022-06-30 11:48:34 +02:00 |
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Gwenna Breton
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f718025e79
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Added doc file for medair
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2022-06-30 11:43:04 +02:00 |
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Gwenna Breton
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bb35d8e5d1
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Added conf file for medair
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2022-06-30 11:42:36 +02:00 |
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Maxime U. Garcia
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23669d2df6
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Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config
Include `check_max()` definition for Sage configuration
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2022-06-23 21:47:17 +02:00 |
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Bruno Grande
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6f0d9e6c43
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Complete check_max() move to global config
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2022-06-23 10:10:28 -07:00 |
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Bruno Grande
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a19d79f6ff
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Move check_max() to global config
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2022-06-23 09:44:16 -07:00 |
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Bruno Grande
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1c7230cb08
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Add Sage-specific Sarek config
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2022-06-23 09:15:42 -07:00 |
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Phil Ewels
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1730751d97
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Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config
[WIP] Add custom configuration for Sage Bionetworks
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2022-06-23 11:34:40 +02:00 |
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Bruno Grande
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37121faf4a
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Fix typoe with label name
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2022-06-22 14:37:43 -07:00 |
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Bruno Grande
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ecd898584d
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Handle Sarek-specific max labels
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2022-06-22 13:54:13 -07:00 |
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Bruno Grande
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c7093dee13
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Reduce max_memory to fit on an instance
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2022-06-16 12:37:32 -07:00 |
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