39 commits

Author	SHA1	Message	Date
maxibor	286e18b80c	update shh config after CDAG departure	2021-02-17 10:22:05 +01:00
Thiseas C. Lamnidis	713a032a36	Add debug profile ... which deactivates cleanup of workdir after successful run	2021-01-26 15:08:21 +01:00
Thiseas C. Lamnidis	71d1ff2226	Add params block to sdag queue ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis	da781907f2	Move sdag queue specification block in sdag profile	2020-11-17 19:45:06 +01:00
Maxime Borry	c95fd9d52f	Merge pull request #186 from jfy133/shh-singularity-runoptions ... Remove custom singularity runOptions from SHH config	2020-11-10 15:39:40 +01:00
James A. Fellows Yates	9d4d682867	Update shh.config	2020-11-10 15:14:03 +01:00
James A. Fellows Yates	e26c22b2f1	Update shh.config	2020-09-29 14:03:35 +02:00
maxibor	69a0bd572b	add temporary CDAG setting for SHH config	2020-07-23 15:38:28 +02:00
James A. Fellows Yates	e31e781f29	Remove debugging	2020-05-26 11:07:06 +02:00
James A. Fellows Yates	8225e07819	Condensed base params and added names for debugging	2020-05-12 12:47:25 +02:00
James A. Fellows Yates	4814bac1c3	Fix sub-profiles	2020-05-12 12:42:42 +02:00
James A. Fellows Yates	41a45187fa	Experiment to see if 'cleanup = true' works as expected	2020-03-03 16:47:49 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
James A. Fellows Yates	842642a2bb	Apply suggestions from code review ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:36 +01:00
James A. Fellows Yates	678a3841b6	Update conf/shh.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:06 +01:00
jfy133	54dafbcfa3	Condensing SHH profiles following https://github.com/nf-core/configs/pull/100	2019-12-05 12:09:11 +01:00
jfy133	6f40c13473	Split shh config for each cluster	2019-11-26 20:20:17 +01:00
James A. Fellows Yates	c3d27099ca	Updated authors	2019-11-26 15:26:05 +01:00
James A. Fellows Yates	ca6ddcadb0	Matching max CPUs to SDAG (supercruncher8)	2019-11-26 15:25:35 +01:00
Maxime Borry	7a2fe44b43	resource based queuing	2019-10-25 15:50:49 +02:00
maxibor	5e54912ada	add queue choice	2019-10-25 14:08:02 +02:00
maxibor	c7eed3fa4c	fix queuesize scope and singularity	2019-06-14 19:16:20 +02:00
maxibor	de1b2aa7d2	remove autoformat added space	2019-04-25 15:50:48 +02:00
maxibor	efd831a8a3	add automounts for singularity	2019-04-25 15:48:20 +02:00
maxibor	9d9ac4c3bb	remove whitespace	2019-04-18 11:22:54 +02:00
maxibor	1772f4119c	adding igenomes to shh config	2019-04-18 11:19:53 +02:00
maxibor	76a5fcf077	switch to queueSize 16 for shh config	2019-03-20 13:44:13 +01:00
maxibor	0929349303	add queueSize limited to 5	2019-03-18 11:13:11 +01:00
James A. Fellows Yates	ecb36dd8c2	Reduced memory and CPUs for cdag compatibility ... Also matches 'fair use' policy	2019-03-14 21:26:43 +01:00
James A. Fellows Yates	3da1373c14	Updated path to centralised singularity cache	2019-03-14 21:16:02 +01:00
Phil Ewels	1191863e1c	Removed params.config_profile_name, added params.hostnames	2019-03-13 17:19:34 +01:00
James A. Fellows Yates	7a51c684f5	Made small SLURM queue change for SHH	2019-01-21 20:31:37 +01:00
Phil Ewels	66a08891c7	Documentation tweaks	2019-01-07 14:25:06 +01:00
Alexander Peltzer	7af6b48b4d	Adjust general usage to separate params section	2019-01-04 14:55:22 +01:00
Alexander Peltzer	078272745a	Update BINAC, CFC, SHH COnfig profiles	2019-01-04 14:42:09 +01:00
Alexander Peltzer	87cea82c43	Use james github handle	2019-01-04 10:21:16 +01:00
Alexander Peltzer	a78fe147f0	Add more details on config profiles	2019-01-04 10:19:39 +01:00
Alexander Peltzer	1051339461	Remove base config stuff	2019-01-03 16:02:07 +01:00
Alexander Peltzer	98fca8a1ef	Add SHH Configuration	2019-01-03 16:01:06 +01:00