1563 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
nvnieuwk	dba85e53fa	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:40:55 +02:00
Nicolas Vannieuwkerke	d12fdfb40a	added to the README	2022-05-20 09:37:55 +02:00
Nicolas Vannieuwkerke	6fa8cd8a6d	added the profile to the test yaml	2022-05-20 09:33:43 +02:00
Nicolas Vannieuwkerke	a2d77df2ee	added default scratch location to markdown file	2022-05-20 09:32:14 +02:00
Nicolas Vannieuwkerke	8621db3440	added the profile to nfcore_custom	2022-05-20 09:21:46 +02:00
Nicolas Vannieuwkerke	2f74c91145	prettier	2022-05-20 09:18:33 +02:00
Nicolas Vannieuwkerke	cc86e6b270	Added the VSC UGent profile	2022-05-20 09:12:18 +02:00
Sarah Guinchard	be9711731a	Merge pull request #375 from nf-core/ifb_core-config-update ... Ifb core config update	2022-05-13 14:45:44 +02:00
Sofia Stamouli	44402cf28e	Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta ... Add hasta config for taxprofiler	2022-05-12 15:23:26 +02:00
sofstam	ca4cdcffee	Fix typo	2022-05-12 15:07:30 +02:00
sofstam	b1deb0abce	Update README.md	2022-05-12 14:56:52 +02:00
Sarah Guinchard	3538f8511a	removed comment	2022-05-12 11:02:42 +02:00
Sarah Guinchard	84457cc655	Update documentation	2022-05-12 11:01:36 +02:00
sofstam	54b3cda34d	Add review suggestion	2022-05-12 11:00:26 +02:00
Sarah Guinchard	6bb7c1a422	Update config file with queue & correct ressources	2022-05-12 10:55:00 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00
James A. Fellows Yates	4a50fd40e7	Merge pull request #374 from jfy133/taxprofiler ... Add taxprofiler pipeline sepcific config for EVA	2022-05-12 10:14:41 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
sofstam	5bc6ed90bd	Add hasta config for taxprofiler	2022-05-11 11:13:31 +02:00
Thiseas C. Lamnidis	65d07a3ead	Merge pull request #372 from nf-core/TCLamnidis-patch-1 ... Update eva.config	2022-05-06 15:53:03 +02:00
Thiseas C. Lamnidis	d09f5fc116	Update eva.config ... eigenstrat_snp_coverage also loads pandas	2022-05-06 15:12:04 +02:00
James A. Fellows Yates	8fbfcfe256	Merge pull request #371 from jfy133/master ... Rename custom log file for EVA	2022-05-06 14:02:03 +02:00
James A. Fellows Yates	95d18270e8	Update eva.config	2022-05-06 13:57:11 +02:00
Emil	e938f3606f	Removes the new SGE clusterOptions for now	2022-05-05 14:09:45 +02:00
Harshil Patel	15c938d05b	Merge pull request #370 from drpatelh/google ... Update retry strategy for preemptible instances on GCP	2022-05-05 11:22:36 +01:00
Harshil Patel	20c826fd50	Update retry strategy for preemptible instances on GCP	2022-05-05 11:10:05 +01:00
Emil	8b9744723c	Fixes hasta java memory issues	2022-05-04 14:13:24 +02:00
Thiseas C. Lamnidis	a543a3ebc6	Merge pull request #369 from TCLamnidis/master ... missing bracket in eager eva.config	2022-05-04 13:14:10 +02:00
Thiseas C. Lamnidis	209601f782	missing bracket	2022-05-04 13:08:13 +02:00
James A. Fellows Yates	c85342a9c9	Merge pull request #368 from TCLamnidis/master ... Update eva.config	2022-05-04 12:32:04 +02:00
Thiseas C. Lamnidis	a42c4344ad	Exclude bionode 06 for software versions	2022-05-03 18:30:42 +02:00
Thiseas C. Lamnidis	08edd19d67	Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1	2022-05-03 17:46:54 +02:00
Thiseas C. Lamnidis	79e227aa4e	Update eva.config	2022-05-03 16:42:21 +02:00
Thiseas C. Lamnidis	085726d081	Update eva.config	2022-05-03 16:36:05 +02:00
Thiseas C. Lamnidis	4592969613	memory for get_software_versions in MB.	2022-05-03 16:30:04 +02:00
Thiseas C. Lamnidis	79ad571319	Update eva.config	2022-05-03 16:25:48 +02:00
Thiseas C. Lamnidis	04226692fe	Update eva.config	2022-05-03 16:21:35 +02:00
Thiseas C. Lamnidis	57095fe79f	Update eva.config ... Set max heap size for java jobs in `get_software_versions`. Limited OpenBLAS threading for python jobs that use numpy/pandas.	2022-05-03 16:12:20 +02:00
James A. Fellows Yates	d1c1b467c1	Merge pull request #366 from jfy133/master ... Add more memory to get_software_versions for eva @ EAGER	2022-05-02 14:54:26 +02:00
James A. Fellows Yates	b5d9b79377	Merge branch 'nf-core:master' into master	2022-05-02 13:59:18 +02:00
James A. Fellows Yates	bf658abc77	Update eva.config	2022-05-02 13:59:13 +02:00
James Fellows Yates	4885b672b1	Prettier	2022-04-25 11:46:32 +02:00
James A. Fellows Yates	b2d6fb6f5e	Merge pull request #365 from rajewski/master ... Cedars-Sinai HPC	2022-04-25 10:44:33 +02:00
Alex Rajewski	d261b3df78	add cedars-sinai	2022-04-22 10:29:22 -07:00
Alex Rajewski	aa2c3e256b	add cedars-sinai	2022-04-22 10:27:50 -07:00
Alex Rajewski	c60d73b565	add Cedars-Sinai HPC	2022-04-22 10:26:32 -07:00
Alex Rajewski	7d6482c652	Merge pull request #1 from rajewski/patch-1 ... usage notes	2022-04-22 10:24:33 -07:00
Alex Rajewski	766eb450be	usage notes	2022-04-22 10:23:19 -07:00
Alex Rajewski	69d1a14894	basic Cedars-Sinai HPC config file	2022-04-22 10:17:13 -07:00
James A. Fellows Yates	c1425c6c01	Merge pull request #364 from jfy133/eva-update ... Update eager @ eva.config to allow retry on post-processing FASTQ	2022-04-22 11:47:10 +02:00