1333 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Daniel Straub	7346bffdc8	Update binac.config ... Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.	2020-01-28 08:48:34 +01:00
James A. Fellows Yates	28d7e4d4e8	Merge pull request #113 from jfy133/master ... Updates SHH specific nf-core/eager pipeline	2019-12-21 22:28:38 +01:00
James A. Fellows Yates	799f2d5788	Grammar tweak	2019-12-21 20:59:48 +01:00
James A. Fellows Yates	435a5892ea	Updated docs corresponding to 638758423a	2019-12-21 20:59:25 +01:00
James A. Fellows Yates	638758423a	Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max	2019-12-21 20:55:54 +01:00
James A. Fellows Yates	5632a0631a	Merge pull request #8 from nf-core/master ... Syncing	2019-12-21 20:51:38 +01:00
Harshil Patel	01b7357d1d	Merge pull request #112 from drpatelh/master ... Change iGenomes path after fullish sync	2019-12-18 11:12:27 +00:00
drpatelh	bcb8950c2f	Change URL to website	2019-12-18 10:57:12 +00:00
drpatelh	be5ed21269	Update docs	2019-12-18 10:54:31 +00:00
drpatelh	67c231d05c	Change igenomes path	2019-12-18 10:54:23 +00:00
Harshil Patel	aadeea0ab9	Merge pull request #111 from drpatelh/master ... Update awsbatch.config	2019-12-12 14:32:59 +00:00
drpatelh	089b5b8e3b	Update config	2019-12-12 13:44:37 +00:00
drpatelh	0779d25255	Update docs	2019-12-12 13:02:51 +00:00
drpatelh	65c5668568	Update config	2019-12-12 13:02:44 +00:00
Maxime Garcia	d36172d4cf	Merge pull request #110 from MaxUlysse/MUNIN ... fix issue with withLabel selector	2019-12-12 13:03:23 +01:00
MaxUlysse	2bf66514c5	fix issue with withLabel selector	2019-12-12 11:50:10 +01:00
Alexander Peltzer	a4fa95150c	Merge pull request #109 from apeltzer/master ... TZ env for binac	2019-12-12 11:10:22 +01:00
Alexander Peltzer	ecc850fd83	Omit this in TOC	2019-12-11 16:13:15 +01:00
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00
Alexander Peltzer	49cd35918a	Remove whitespace	2019-12-11 15:59:58 +01:00
Alexander Peltzer	5e6981d0ee	Export TZ in binac config	2019-12-11 15:59:25 +01:00
Alexander Peltzer	271e20e306	Merge pull request #108 from nf-core/fix-env-binac ... Update envWhiteList for Binac Profile for testing purposes	2019-12-11 14:31:22 +01:00
Alexander Peltzer	ac90acf470	Update envWhiteList for Binac Profile for testing purposes ... Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114	2019-12-11 14:26:57 +01:00
Alexander Peltzer	e429758e25	Merge pull request #107 from nf-core/pipelineconfigs_readme_update ... Update README to mention EAGER specific configs	2019-12-10 12:19:26 +01:00
James A. Fellows Yates	71b47e3efa	Updated README to include EAGER specific configs	2019-12-10 11:39:24 +01:00
James A. Fellows Yates	09bc644dcf	Merge pull request #106 from jfy133/master ... Fixes shh eager-specific profile	2019-12-06 20:02:59 +01:00
James A. Fellows Yates	0beb98696f	Merge branch 'master' into master	2019-12-06 19:31:24 +01:00
James A. Fellows Yates	8747be8120	More tweaks, nextflow appears to add a little extra?	2019-12-06 19:27:16 +01:00
James A. Fellows Yates	5c6760b2f0	Tweak back again	2019-12-06 19:25:07 +01:00
James A. Fellows Yates	46f6d20a77	Put parameters back to correct levels	2019-12-06 19:13:29 +01:00
Phil Ewels	4b0fd12752	Merge pull request #105 from nf-core/jfy133-patch-1 ... Wrong bracket typo fix -.-	2019-12-06 19:12:50 +01:00
James A. Fellows Yates	18931763fa	Add space?	2019-12-06 19:11:08 +01:00
James A. Fellows Yates	f59443daf0	Update shh.config	2019-12-06 19:09:20 +01:00
James A. Fellows Yates	1ab1370872	Try to make resources satisfiable	2019-12-06 19:06:05 +01:00
James A. Fellows Yates	6e596d1730	Fix stupid wrong bracket typo -.-	2019-12-06 18:37:39 +01:00
James A. Fellows Yates	b28e1a0905	Wrong bracket typo fix -.-	2019-12-06 18:34:18 +01:00
Alexander Peltzer	1f7940c2ee	Merge pull request #104 from jfy133/master ... Attempt to fix process specific configs with pipeline specific configs	2019-12-06 17:16:37 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
Maxime Garcia	9497b78149	Merge pull request #100 from MaxUlysse/UPPMAX ... Improve UPPMAX configs	2019-12-06 10:52:44 +01:00
Maxime Garcia	79528de92f	Update docs/uppmax.md ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2019-12-06 10:47:09 +01:00
Maxime Garcia	14864bb80b	Update conf/uppmax.config	2019-12-06 10:31:56 +01:00
Alexander Peltzer	da547b4ce3	Merge pull request #102 from phue/cbe_singularity ... cbe: load singularity/3.4.1	2019-12-06 10:21:55 +01:00
phue	fa777180e6	cbe: map hostname	2019-12-05 23:46:25 +01:00
James A. Fellows Yates	0033b74e4e	Update shh.config	2019-12-05 18:08:39 +01:00
James A. Fellows Yates	dc0f1dfb40	Update shh.config	2019-12-05 17:58:49 +01:00
James A. Fellows Yates	b1a8b45aa0	Maybe typo?	2019-12-05 17:52:53 +01:00
James A. Fellows Yates	ab6c5f05ac	Merge pull request #7 from nf-core/master ... syncing	2019-12-05 17:37:17 +01:00
James A. Fellows Yates	0467b44f21	Merge pull request #103 from jfy133/master ... EAGER Pipeline specific config for SHH	2019-12-05 17:21:18 +01:00
jfy133	1650080b6e	Linting	2019-12-05 17:03:07 +01:00
jfy133	731372dac2	Added SHH specific EAGER configuration	2019-12-05 17:01:10 +01:00