Gwennid
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96fd2bf217
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Fixed formatting
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2022-07-06 11:42:05 +02:00 |
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Gwenna Breton
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1d13dd9fbc
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Changed where cgg-it is mentioned
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2022-07-06 11:24:03 +02:00 |
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Gwenna Breton
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235097e58e
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Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
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2022-07-06 11:20:59 +02:00 |
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Gwenna Breton
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1d7a34b11f
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Removed comment about internal doc
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2022-07-06 11:17:58 +02:00 |
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Gwenna Breton
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b202ad70ac
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Removed mention of specific module versions
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2022-07-06 11:16:38 +02:00 |
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James A. Fellows Yates
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08435ca300
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Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
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2022-07-04 13:42:13 +02:00 |
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James A. Fellows Yates
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a141ff626b
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Merge branch 'master' into eva-java-correction
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2022-07-04 13:35:50 +02:00 |
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Gwenna Breton
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b3a6e199ca
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Merge branch 'nf-core:master' into medair
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2022-07-01 17:02:56 +02:00 |
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Maxime U. Garcia
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49e779e337
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Merge pull request #394 from nvnieuwk/vsc-ugent-fix
Vsc ugent fix for job-intensive pipelines
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2022-07-01 16:26:41 +02:00 |
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Nicolas Vannieuwkerke
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8a74c517d4
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Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix
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2022-07-01 16:16:22 +02:00 |
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Nicolas Vannieuwkerke
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1e34595280
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removed queue size limit
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2022-07-01 16:16:18 +02:00 |
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nvnieuwk
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5ff845cde7
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Merge branch 'master' into vsc-ugent-fix
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2022-07-01 16:10:45 +02:00 |
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Nicolas Vannieuwkerke
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fa949a069e
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added queuesize
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2022-07-01 16:01:19 +02:00 |
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Nicolas Vannieuwkerke
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abfa3f47f4
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lowered the job submit rate of vsc_ugent
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2022-07-01 15:55:44 +02:00 |
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Gwenna Breton
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84174043e4
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Added details for nf-core pipelines download
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2022-06-30 16:41:50 +02:00 |
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Gwenna Breton
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2398110ea5
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Added info on dowloading pipelines
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2022-06-30 14:24:17 +02:00 |
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Gwenna Breton
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22f73b06f9
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Updated info about the different profiles
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2022-06-30 12:00:05 +02:00 |
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Gwenna Breton
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77dba3256a
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Add profile name to test scope
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2022-06-30 11:53:02 +02:00 |
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Gwenna Breton
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abccece8a3
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Added medair config file to the list
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2022-06-30 11:49:47 +02:00 |
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Gwenna Breton
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77017e877a
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Added medair configuration docs to the list
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2022-06-30 11:48:34 +02:00 |
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Gwenna Breton
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f718025e79
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Added doc file for medair
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2022-06-30 11:43:04 +02:00 |
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Gwenna Breton
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bb35d8e5d1
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Added conf file for medair
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2022-06-30 11:42:36 +02:00 |
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Maxime U. Garcia
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23669d2df6
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Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config
Include `check_max()` definition for Sage configuration
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2022-06-23 21:47:17 +02:00 |
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Bruno Grande
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6f0d9e6c43
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Complete check_max() move to global config
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2022-06-23 10:10:28 -07:00 |
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Bruno Grande
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a19d79f6ff
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Move check_max() to global config
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2022-06-23 09:44:16 -07:00 |
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Bruno Grande
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1c7230cb08
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Add Sage-specific Sarek config
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2022-06-23 09:15:42 -07:00 |
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Phil Ewels
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1730751d97
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Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config
[WIP] Add custom configuration for Sage Bionetworks
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2022-06-23 11:34:40 +02:00 |
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Bruno Grande
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37121faf4a
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Fix typoe with label name
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2022-06-22 14:37:43 -07:00 |
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Bruno Grande
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ecd898584d
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Handle Sarek-specific max labels
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2022-06-22 13:54:13 -07:00 |
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Bruno Grande
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c7093dee13
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Reduce max_memory to fit on an instance
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2022-06-16 12:37:32 -07:00 |
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James Fellows Yates
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ba8bffbdfd
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Use env scope instead of beforescript for mag@eva
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2022-06-15 15:39:36 +02:00 |
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James Fellows Yates
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d12d98fb2e
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Merge branches 'master' and 'eva-java-correction' of github.com:jfy133/nf-core-configs into master
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2022-06-15 15:38:35 +02:00 |
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James Fellows Yates
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acabcbd9e8
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Use _JAVA_OPTIONS instead
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2022-06-15 15:27:40 +02:00 |
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James Fellows Yates
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76b0d1dd85
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Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction
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2022-06-15 15:22:25 +02:00 |
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James Fellows Yates
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58dd9d49c7
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Move beforeScript exports to env scope
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2022-06-15 15:21:20 +02:00 |
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Emil Bertilsson
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c8c795595a
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Merge branch 'nf-core:master' into feat/hasta_java_memory_fix
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2022-06-09 15:10:46 +02:00 |
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Emil Bertilsson
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72e995f326
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Adds generic fix for java memory issue on slurm
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2022-06-09 10:28:20 +02:00 |
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Bruno Grande
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2898736cbe
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Add Sage Bionetworks nf-core configuration
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2022-06-08 14:16:52 -07:00 |
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Maxime U. Garcia
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b50af6bf7e
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Merge pull request #388 from nvnieuwk/singularity-fix-for-vsc_ugent
Singularity fix for vsc ugent
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2022-06-08 16:34:38 +02:00 |
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Nicolas Vannieuwkerke
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b6d38859f0
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fix for singularity cache for vsc_ugent profile
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2022-06-08 16:28:28 +02:00 |
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Nicolas Vannieuwkerke
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98eacf030d
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fix for singularity cache for vsc_ugent profile
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2022-06-08 16:27:48 +02:00 |
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Andrew Frank
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d8c2775976
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Update google.config to fix custom VM memory error
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2022-06-07 09:41:41 -04:00 |
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Maxime U. Garcia
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844d250011
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Merge branch 'master' into eva-java-correction
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2022-06-07 11:57:05 +02:00 |
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Maxime U. Garcia
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5fdc8b7b1b
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Merge pull request #381 from maxulysse/master
add fix linting from comment
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2022-06-07 11:54:19 +02:00 |
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Maxime U. Garcia
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b0f1746abf
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Merge branch 'master' into master
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2022-06-07 11:42:50 +02:00 |
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James A. Fellows Yates
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515cbf0a77
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Merge pull request #385 from nvnieuwk/fix-for-failing-tests-vsc-ugent-profile
Fix for failing tests for vsc_ugent
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2022-06-07 11:41:00 +02:00 |
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Nicolas Vannieuwkerke
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44e25830e4
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update for vsc_ugent
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2022-06-07 11:33:22 +02:00 |
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James A. Fellows Yates
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46fba9c597
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Update eva.config
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2022-06-03 21:10:48 +02:00 |
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James A. Fellows Yates
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05cc8a08f1
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Update eva.config
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2022-06-03 21:08:19 +02:00 |
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Maxime U. Garcia
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4587fc4215
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Merge pull request #379 from nf-core/config_ucph-mjolnir_ash
custom config mjolnir_globe
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2022-06-03 17:28:57 +02:00 |
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