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Author	SHA1	Message	Date
James A. Fellows Yates	546393ed18	Apply suggestions from code review	2022-03-03 14:22:35 +01:00
ilight1542	5a0543e4ac	Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update	2022-03-03 14:17:18 +01:00
ilight1542	25c644abb7	modified mpcdf configs (general + eager)	2022-03-03 13:55:02 +01:00
James Fellows Yates	7112e74b73	Tweak settings based on latest batch specs	2022-03-03 13:43:40 +01:00
James Fellows Yates	008ade7ab3	Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf	2022-03-03 12:26:18 +01:00
James Fellows Yates	e649bfbb2e	Linting	2022-03-03 12:26:14 +01:00
James A. Fellows Yates	17312604cf	Update mpcdf.config	2022-03-03 12:25:06 +01:00
James Fellows Yates	94f8cbcb84	Add rnaseq pipeline specific config for MPCDF	2022-03-03 12:20:02 +01:00
James A. Fellows Yates	341ea3664e	Merge pull request #336 from jfy133/master ... Fix markdown linting from recently merged configs	2022-03-02 08:57:20 +01:00
James A. Fellows Yates	121452afad	Linting	2022-03-02 08:51:20 +01:00
James A. Fellows Yates	15a0571eae	Fix markdown	2022-03-02 08:50:42 +01:00
James A. Fellows Yates	a412510ce8	Merge pull request #335 from jfy133/master ... Remove reference to now-decomissioned dracro @ MPCDF & clean up eager @EVA	2022-03-02 08:47:47 +01:00
James A. Fellows Yates	adcfe22f98	Remove draco entry to MPCDF profiles due to decomissioning	2022-03-02 08:38:55 +01:00
James A. Fellows Yates	8174fe6d52	Merge pull request #2 from nf-core/jfy133-patch ... sync	2022-03-02 08:34:31 +01:00
James A. Fellows Yates	5547e45ab5	Merge branch 'master' into jfy133-patch	2022-03-02 08:28:22 +01:00
James A. Fellows Yates	ea052a7b67	Merge pull request #334 from jfy133/eva-update ... eva: generalise custom SGE mem flag	2022-03-01 09:23:04 +01:00
James A. Fellows Yates	a6c12d8edc	Merge pull request #322 from U-BDS/master ... Add UAB Cheaha profile	2022-03-01 08:29:54 +01:00
Austyn Trull	00deea7442	Adding cheaha to Github Actions testing yaml.	2022-02-28 10:00:13 -06:00
James A. Fellows Yates	06aaebbad1	Merge pull request #303 from PCQuilis/patch-2 ... added marvin.md link	2022-02-28 15:03:20 +01:00
James A. Fellows Yates	4fbebac9b3	Merge pull request #304 from PCQuilis/patch-1 ... Create marvin.md added marvin config	2022-02-28 15:03:07 +01:00
James A. Fellows Yates	d6f5209afc	Update marvin.md	2022-02-28 15:01:12 +01:00
James A. Fellows Yates	faf83eaeaa	Merge pull request #305 from PCQuilis/master ... conf file in lowercase	2022-02-28 14:59:22 +01:00
James A. Fellows Yates	04d8a02ec9	Update nfcore_custom.config	2022-02-28 14:56:37 +01:00
James A. Fellows Yates	5c686f996f	Update main.yml	2022-02-28 14:52:32 +01:00
PCQ	1ff92db608	Merge branch 'nf-core:master' into master	2022-02-28 14:50:41 +01:00
James A. Fellows Yates	89f6484325	Merge pull request #319 from maltesemike/patch-2 ... Update mpcdf.config	2022-02-28 14:06:06 +01:00
James A. Fellows Yates	46f046d477	Update eva.config	2022-02-28 14:00:37 +01:00
James A. Fellows Yates	d7d9951dbf	Insert h_vmem for all nf-core pipelines	2022-02-28 14:00:16 +01:00
James A. Fellows Yates	6210ee874c	Update eva.config	2022-02-28 13:57:37 +01:00
Mei Wu	ff5750936d	Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus ... picard md is single threaded	2022-02-23 16:40:57 +01:00
Mei Wu	dcba537d15	picard md is single threaded	2022-02-21 16:19:17 +01:00
Maxime U. Garcia	91b5875b44	Merge pull request #331 from nf-core/praveenraj2018-patch-1 ... Added: runOptions to singularity	2022-02-14 13:12:11 +01:00
Maxime U. Garcia	41e00ae8f9	Update conf/munin.config	2022-02-14 13:11:46 +01:00
Praveen Raj S	90936a5518	Added: runOptions to singularity ... To bind external mount directories at runtime.	2022-02-14 12:45:20 +01:00
Combiz Khozoie	2d434c6ee5	Merge pull request #321 from nf-core/combiz-patch-1 ... Imperial config updates	2022-02-11 14:49:30 +00:00
Maxime U. Garcia	4a936a685e	Merge pull request #317 from nf-core/praveenraj2018-patch-1 ... Added genome parameter	2022-02-11 15:33:18 +01:00
Combiz Khozoie	a77f718ae2	Merge pull request #330 from nf-core/master ... Pulling master to branch	2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber	0d18767d0c	Merge pull request #329 from mashehu/master ... update node version for markdownlint	2022-02-11 14:32:38 +01:00
Matthias Hörtenhuber	b98ab26662	fix markdownlint errors	2022-02-11 14:09:16 +01:00
Matthias Hörtenhuber	fcc856c8da	update node version for markdownlint	2022-02-11 11:03:18 +00:00
Combiz Khozoie	3ce32f50c4	Update imperial.config ... Moved params configs from internal profile to universal	2022-02-11 11:02:40 +00:00
Combiz Khozoie	683564de1b	Update main.yml ... Removed deprecated imperial medbio from GHA	2022-02-11 09:35:18 +00:00
Combiz Khozoie	8937699abe	Update README.md ... Added imperial docs link	2022-02-11 09:33:54 +00:00
Combiz Khozoie	f33bc965d6	Update nfcore_custom.config ... Removed deprecated medbio config	2022-02-11 09:32:50 +00:00
Combiz Khozoie	b99b74b2d3	Update imperial.config ... Fixed indent	2022-02-11 00:26:45 +00:00
Combiz Khozoie	c5e4ac2025	Update scflow.config ... Removed line corresponding to profile deprecated by change to internal profiles	2022-02-11 00:25:44 +00:00
Combiz Khozoie	34d9e7a967	Update imperial.md ... Updated docs to reflect use of internal profiles	2022-02-11 00:08:08 +00:00
Combiz Khozoie	5aa1abda26	Delete imperial_mb.md ... Deprecated in favour of internal profiles within the single imperial.config	2022-02-11 00:07:05 +00:00
Combiz Khozoie	14c7662762	Update imperial.md ... Updated docs to reflect restructuring for internal profiles	2022-02-10 23:49:43 +00:00
Combiz Khozoie	38a05a6531	Update imperial.config ... Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.	2022-02-10 23:46:14 +00:00