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Author	SHA1	Message	Date
James A. Fellows Yates	5547e45ab5	Merge branch 'master' into jfy133-patch	2022-03-02 08:28:22 +01:00
James A. Fellows Yates	ea052a7b67	Merge pull request #334 from jfy133/eva-update ... eva: generalise custom SGE mem flag	2022-03-01 09:23:04 +01:00
James A. Fellows Yates	a6c12d8edc	Merge pull request #322 from U-BDS/master ... Add UAB Cheaha profile	2022-03-01 08:29:54 +01:00
Austyn Trull	00deea7442	Adding cheaha to Github Actions testing yaml.	2022-02-28 10:00:13 -06:00
James A. Fellows Yates	06aaebbad1	Merge pull request #303 from PCQuilis/patch-2 ... added marvin.md link	2022-02-28 15:03:20 +01:00
James A. Fellows Yates	4fbebac9b3	Merge pull request #304 from PCQuilis/patch-1 ... Create marvin.md added marvin config	2022-02-28 15:03:07 +01:00
James A. Fellows Yates	d6f5209afc	Update marvin.md	2022-02-28 15:01:12 +01:00
James A. Fellows Yates	faf83eaeaa	Merge pull request #305 from PCQuilis/master ... conf file in lowercase	2022-02-28 14:59:22 +01:00
James A. Fellows Yates	04d8a02ec9	Update nfcore_custom.config	2022-02-28 14:56:37 +01:00
James A. Fellows Yates	5c686f996f	Update main.yml	2022-02-28 14:52:32 +01:00
PCQ	1ff92db608	Merge branch 'nf-core:master' into master	2022-02-28 14:50:41 +01:00
James A. Fellows Yates	89f6484325	Merge pull request #319 from maltesemike/patch-2 ... Update mpcdf.config	2022-02-28 14:06:06 +01:00
James A. Fellows Yates	46f046d477	Update eva.config	2022-02-28 14:00:37 +01:00
James A. Fellows Yates	d7d9951dbf	Insert h_vmem for all nf-core pipelines	2022-02-28 14:00:16 +01:00
James A. Fellows Yates	6210ee874c	Update eva.config	2022-02-28 13:57:37 +01:00
Mei Wu	ff5750936d	Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus ... picard md is single threaded	2022-02-23 16:40:57 +01:00
Mei Wu	dcba537d15	picard md is single threaded	2022-02-21 16:19:17 +01:00
Maxime U. Garcia	91b5875b44	Merge pull request #331 from nf-core/praveenraj2018-patch-1 ... Added: runOptions to singularity	2022-02-14 13:12:11 +01:00
Maxime U. Garcia	41e00ae8f9	Update conf/munin.config	2022-02-14 13:11:46 +01:00
Praveen Raj S	90936a5518	Added: runOptions to singularity ... To bind external mount directories at runtime.	2022-02-14 12:45:20 +01:00
Combiz Khozoie	2d434c6ee5	Merge pull request #321 from nf-core/combiz-patch-1 ... Imperial config updates	2022-02-11 14:49:30 +00:00
Maxime U. Garcia	4a936a685e	Merge pull request #317 from nf-core/praveenraj2018-patch-1 ... Added genome parameter	2022-02-11 15:33:18 +01:00
Combiz Khozoie	a77f718ae2	Merge pull request #330 from nf-core/master ... Pulling master to branch	2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber	0d18767d0c	Merge pull request #329 from mashehu/master ... update node version for markdownlint	2022-02-11 14:32:38 +01:00
Matthias Hörtenhuber	b98ab26662	fix markdownlint errors	2022-02-11 14:09:16 +01:00
Matthias Hörtenhuber	fcc856c8da	update node version for markdownlint	2022-02-11 11:03:18 +00:00
Combiz Khozoie	3ce32f50c4	Update imperial.config ... Moved params configs from internal profile to universal	2022-02-11 11:02:40 +00:00
Combiz Khozoie	683564de1b	Update main.yml ... Removed deprecated imperial medbio from GHA	2022-02-11 09:35:18 +00:00
Combiz Khozoie	8937699abe	Update README.md ... Added imperial docs link	2022-02-11 09:33:54 +00:00
Combiz Khozoie	f33bc965d6	Update nfcore_custom.config ... Removed deprecated medbio config	2022-02-11 09:32:50 +00:00
Combiz Khozoie	b99b74b2d3	Update imperial.config ... Fixed indent	2022-02-11 00:26:45 +00:00
Combiz Khozoie	c5e4ac2025	Update scflow.config ... Removed line corresponding to profile deprecated by change to internal profiles	2022-02-11 00:25:44 +00:00
Combiz Khozoie	34d9e7a967	Update imperial.md ... Updated docs to reflect use of internal profiles	2022-02-11 00:08:08 +00:00
Combiz Khozoie	5aa1abda26	Delete imperial_mb.md ... Deprecated in favour of internal profiles within the single imperial.config	2022-02-11 00:07:05 +00:00
Combiz Khozoie	14c7662762	Update imperial.md ... Updated docs to reflect restructuring for internal profiles	2022-02-10 23:49:43 +00:00
Combiz Khozoie	38a05a6531	Update imperial.config ... Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.	2022-02-10 23:46:14 +00:00
Combiz Khozoie	e1d0bf0cd2	Delete imperial_mb.config ... Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config	2022-02-10 23:44:49 +00:00
Combiz Khozoie	fe5474a029	Update imperial.config ... Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC	2022-02-10 23:02:47 +00:00
Harshil Patel	8fa6ab9b35	Merge pull request #323 from stevin-wilson/patch-1 ... Added ARTIC v4.1 primer set information	2022-02-10 19:17:47 +00:00
James A. Fellows Yates	92424ee2c3	Merge pull request #328 from jfy133/eva-update ... eager @ EVA walltime whole year	2022-02-10 17:23:04 +01:00
James Fellows Yates	88ddc9eee7	fffff	2022-02-10 11:34:57 +01:00
James Fellows Yates	d7d0f5cecc	Change base time	2022-02-10 11:32:49 +01:00
James Fellows Yates	dbd78f8075	Re add .	2022-02-10 11:26:18 +01:00
James Fellows Yates	dd94895f16	remove quotes	2022-02-10 11:22:45 +01:00
James Fellows Yates	39c2d9b25b	Oops	2022-02-10 11:19:16 +01:00
James Fellows Yates	c0ee3225ad	Add times for 365d	2022-02-10 11:02:52 +01:00
James A. Fellows Yates	192839c8be	Merge pull request #327 from nf-core/TCLamnidis-patch-2 ... Removed all time limits	2022-02-10 10:22:53 +01:00
Thiseas C. Lamnidis	fa4075c2a0	Removed all time limits	2022-02-10 10:00:18 +01:00
James A. Fellows Yates	64355b84d2	Merge pull request #325 from jfy133/eva-update ... Read add empty BAM exit code for qualimap 255 for eager @ EVA	2022-02-08 11:28:36 +01:00
James A. Fellows Yates	2b06293f64	Read add empty BAM exit code for qualitmap 255	2022-02-08 11:15:17 +01:00