James A. Fellows Yates
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962d86d604
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Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
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2022-03-18 13:01:36 +01:00 |
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Nathan S. Watson-Haigh
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30f710ada4
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Add debug profile
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2022-03-17 13:38:43 +10:30 |
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Praveen Raj S
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1d4f254e43
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Update munin.config
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2022-03-16 14:37:28 +01:00 |
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Praveen Raj S
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9747d5fe15
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Added PileupSummariesForMutect2 in CPU limit list
Add PileupSummariesForMutect2 to the list to run with less threads.
Changed the MaxForks to 12
Tested on an internal sample and it worked!
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2022-03-16 14:36:25 +01:00 |
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Alexander Peltzer
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d510cb254e
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Merge pull request #165 from ewels/fix-show-profiles
Set params.custom_config_base in nextflow.config
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2022-03-15 17:13:24 +01:00 |
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Praveen Raj S
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a844335942
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:59:06 +01:00 |
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Praveen Raj S
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cb96c4bd2d
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:11 +01:00 |
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Praveen Raj S
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13c66f7e98
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:03 +01:00 |
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Praveen Raj S
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50c4610345
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Adjusted time and maxforks for Mutect2
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2022-03-15 16:29:19 +01:00 |
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Alexander Peltzer
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3e4fae71a4
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Merge branch 'master' into fix-show-profiles
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2022-03-15 14:52:29 +01:00 |
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James A. Fellows Yates
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1b5037ce5e
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Update eva.config
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2022-03-15 07:49:06 +01:00 |
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James A. Fellows Yates
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1565b2ce63
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Update eva.config
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2022-03-15 07:42:23 +01:00 |
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James A. Fellows Yates
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f725b6c431
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Apply suggestions from code review
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2022-03-15 07:36:34 +01:00 |
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Nathan S. Watson-Haigh
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a0f5ac7445
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Added references subdir to igenomes_base
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2022-03-15 11:41:51 +10:30 |
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James A. Fellows Yates
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4670f8bf0c
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Update eva.config
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2022-03-14 14:56:01 +01:00 |
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James A. Fellows Yates
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a2e2e94333
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Merge pull request #344 from njspix/vai
Add VAI configuration
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2022-03-14 14:36:00 +01:00 |
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Nathan Watson-Haigh
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cc55026751
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Add singularity to PATH
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2022-03-13 07:39:31 +10:30 |
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Nathan Watson-Haigh
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2f0b022571
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Fixed typos
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2022-03-13 00:08:42 +10:30 |
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Nathan Watson-Haigh
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b638694bd0
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Added SAHMRI HPC profile
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2022-03-12 21:17:33 +10:30 |
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Matiss
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6c79c75eec
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Merge pull request #290 from maxozo/master
added leicester profile
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2022-03-11 09:21:09 +00:00 |
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Nathan Spix
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d067f61329
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remove extra spaces
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2022-03-07 15:22:18 -05:00 |
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Spix
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17c77ad516
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update singularity command
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2022-03-07 15:13:26 -05:00 |
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Spix
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c97c48ae5b
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update singularity command
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2022-03-07 15:11:45 -05:00 |
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Spix
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429c7b4fa8
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initial commit
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2022-03-07 15:01:46 -05:00 |
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Alexander Peltzer
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d0d86bfb2a
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Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
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2022-03-07 13:59:08 +01:00 |
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James A. Fellows Yates
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975fca6721
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Apply suggestions from code review
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2022-03-07 13:51:00 +01:00 |
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Natalia Zajac
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97058995ef
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Update on singularity cache
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2022-03-07 12:37:01 +01:00 |
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Natalia Zajac
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e07a0e548e
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Config Addition
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2022-03-04 12:16:01 +01:00 |
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James Fellows Yates
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70318c3b2a
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Tweak eager settigs
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2022-03-03 14:29:30 +01:00 |
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James A. Fellows Yates
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546393ed18
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Apply suggestions from code review
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2022-03-03 14:22:35 +01:00 |
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ilight1542
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5a0543e4ac
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Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update
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2022-03-03 14:17:18 +01:00 |
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ilight1542
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25c644abb7
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modified mpcdf configs (general + eager)
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2022-03-03 13:55:02 +01:00 |
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James Fellows Yates
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7112e74b73
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Tweak settings based on latest batch specs
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2022-03-03 13:43:40 +01:00 |
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James A. Fellows Yates
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17312604cf
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Update mpcdf.config
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2022-03-03 12:25:06 +01:00 |
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James Fellows Yates
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94f8cbcb84
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Add rnaseq pipeline specific config for MPCDF
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2022-03-03 12:20:02 +01:00 |
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James A. Fellows Yates
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5547e45ab5
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Merge branch 'master' into jfy133-patch
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2022-03-02 08:28:22 +01:00 |
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James A. Fellows Yates
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ea052a7b67
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Merge pull request #334 from jfy133/eva-update
eva: generalise custom SGE mem flag
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2022-03-01 09:23:04 +01:00 |
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James A. Fellows Yates
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a6c12d8edc
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Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
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2022-03-01 08:29:54 +01:00 |
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PCQ
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1ff92db608
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Merge branch 'nf-core:master' into master
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2022-02-28 14:50:41 +01:00 |
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James A. Fellows Yates
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89f6484325
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Merge pull request #319 from maltesemike/patch-2
Update mpcdf.config
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2022-02-28 14:06:06 +01:00 |
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James A. Fellows Yates
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46f046d477
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Update eva.config
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2022-02-28 14:00:37 +01:00 |
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James A. Fellows Yates
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d7d9951dbf
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Insert h_vmem for all nf-core pipelines
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2022-02-28 14:00:16 +01:00 |
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James A. Fellows Yates
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6210ee874c
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Update eva.config
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2022-02-28 13:57:37 +01:00 |
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Mei Wu
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dcba537d15
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picard md is single threaded
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2022-02-21 16:19:17 +01:00 |
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Maxime U. Garcia
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41e00ae8f9
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Update conf/munin.config
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2022-02-14 13:11:46 +01:00 |
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Praveen Raj S
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90936a5518
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Added: runOptions to singularity
To bind external mount directories at runtime.
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2022-02-14 12:45:20 +01:00 |
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Combiz Khozoie
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2d434c6ee5
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Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
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2022-02-11 14:49:30 +00:00 |
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Maxime U. Garcia
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4a936a685e
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Merge pull request #317 from nf-core/praveenraj2018-patch-1
Added genome parameter
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2022-02-11 15:33:18 +01:00 |
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Combiz Khozoie
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a77f718ae2
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Merge pull request #330 from nf-core/master
Pulling master to branch
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2022-02-11 14:18:01 +00:00 |
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Combiz Khozoie
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3ce32f50c4
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Update imperial.config
Moved params configs from internal profile to universal
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2022-02-11 11:02:40 +00:00 |
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