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336 commits

Author SHA1 Message Date
James A. Fellows Yates
962d86d604
Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
2022-03-18 13:01:36 +01:00
James A. Fellows Yates
a2e2e94333
Merge pull request #344 from njspix/vai
Add VAI configuration
2022-03-14 14:36:00 +01:00
Nathan Watson-Haigh
dba3fb4c1d Added SAHMRI HPC profile docs 2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh
b638694bd0 Added SAHMRI HPC profile 2022-03-12 21:17:33 +10:30
Matiss
6c79c75eec
Merge pull request #290 from maxozo/master
added leicester profile
2022-03-11 09:21:09 +00:00
Spix
429c7b4fa8 initial commit 2022-03-07 15:01:46 -05:00
Alexander Peltzer
d0d86bfb2a
Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
2022-03-07 13:59:08 +01:00
James A. Fellows Yates
975fca6721
Apply suggestions from code review 2022-03-07 13:51:00 +01:00
Natalia Zajac
c2e0c9e6d4 Update on md file 2022-03-07 12:59:56 +01:00
Natalia Zajac
e07a0e548e Config Addition 2022-03-04 12:16:01 +01:00
James Fellows Yates
70318c3b2a Tweak eager settigs 2022-03-03 14:29:30 +01:00
James Fellows Yates
7112e74b73 Tweak settings based on latest batch specs 2022-03-03 13:43:40 +01:00
James Fellows Yates
e649bfbb2e Linting 2022-03-03 12:26:14 +01:00
James Fellows Yates
94f8cbcb84 Add rnaseq pipeline specific config for MPCDF 2022-03-03 12:20:02 +01:00
James A. Fellows Yates
121452afad
Linting 2022-03-02 08:51:20 +01:00
James A. Fellows Yates
15a0571eae
Fix markdown 2022-03-02 08:50:42 +01:00
James A. Fellows Yates
adcfe22f98
Remove draco entry to MPCDF profiles due to decomissioning 2022-03-02 08:38:55 +01:00
James A. Fellows Yates
a6c12d8edc
Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
2022-03-01 08:29:54 +01:00
James A. Fellows Yates
4fbebac9b3
Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
2022-02-28 15:03:07 +01:00
James A. Fellows Yates
d6f5209afc
Update marvin.md 2022-02-28 15:01:12 +01:00
Combiz Khozoie
a77f718ae2
Merge pull request #330 from nf-core/master
Pulling master to branch
2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber
b98ab26662 fix markdownlint errors 2022-02-11 14:09:16 +01:00
Combiz Khozoie
34d9e7a967
Update imperial.md
Updated docs to reflect use of internal profiles
2022-02-11 00:08:08 +00:00
Combiz Khozoie
5aa1abda26
Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
2022-02-11 00:07:05 +00:00
Combiz Khozoie
14c7662762
Update imperial.md
Updated docs to reflect restructuring for internal profiles
2022-02-10 23:49:43 +00:00
phue
a6dd3aa0f1 cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
2022-02-04 10:21:52 +01:00
Lara Ianov
f876227a38 added note on screen, conda, and interactive partitions 2022-01-28 12:18:11 -06:00
Austyn Trull
06541411dd Initial commit of cheaha profile 2022-01-28 11:37:42 -06:00
Kevin Brick
afb6fbb767
Trailing spaces 2021-12-17 00:46:50 -05:00
Kevin Brick
05f7b59573
Update nihbiowulf.md 2021-12-17 00:44:39 -05:00
Kevin Brick
9cf4f69ff3
Add files via upload 2021-12-17 00:37:11 -05:00
praveenraj2018
00a3ed0fa6
Formatting 2021-12-14 21:24:18 +01:00
Praveen
b4d5330c0e Added rnavar pipeline config for Munin 2021-12-14 03:52:37 +01:00
PCQ
a72f1a243c
Create marvin.md 2021-12-10 17:39:32 +01:00
Venkat Malladi
d722e7206e Fix readme to remove blob account. 2021-11-18 18:06:54 -06:00
Phil Ewels
4785ceccba
Merge pull request #245 from ikeller/unibe_ibu
Unibe ibu
2021-11-19 00:56:25 +01:00
Phil Ewels
b25bd1ce42
Update docs/azurebatch.md 2021-11-19 00:54:39 +01:00
Venkat Malladi
ed4c1d5f22 Remove work_dir option. 2021-11-18 17:52:24 -06:00
Phil Ewels
286fa6753a
Apply suggestions from code review 2021-11-19 00:07:33 +01:00
Phil Ewels
a26b3bf1e3
Merge branch 'master' into unibe_ibu 2021-11-19 00:02:30 +01:00
Venkat Malladi
f25dc57f00 Fix headers. 2021-11-18 15:50:12 -06:00
Venkat Malladi
1dacc2f3fe Fix liniting errors in headers. 2021-11-18 15:49:08 -06:00
Venkat Malladi
845a9ce971 Update Readme with more inforamtion on the options. 2021-11-18 15:47:27 -06:00
Venkat Malladi
219244f1b4 Add in sample datastorage for Illumina Platinum genomes. 2021-11-18 15:28:34 -06:00
Venkat Malladi
237f91a3b7 Add in minmum config for azure. 2021-11-18 14:51:39 -06:00
Harshil Patel
a098ad9e06 Add Chris as main contact at The Crick 2021-11-03 11:11:05 +00:00
Matiss Ozols
5222d7ed9b added leicester profile 2021-10-21 19:08:06 +01:00
Matiss Ozols
1f58ea42c7 added leicester profile 2021-10-21 19:06:03 +01:00
Matiss Ozols
98a69683c2 added leicester profile 2021-10-21 19:04:48 +01:00
Matiss Ozols
f8b932ae2d added leicester profile 2021-10-21 18:32:57 +01:00