James Fellows Yates
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70318c3b2a
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Tweak eager settigs
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2022-03-03 14:29:30 +01:00 |
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ilight1542
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25c644abb7
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modified mpcdf configs (general + eager)
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2022-03-03 13:55:02 +01:00 |
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James A. Fellows Yates
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5547e45ab5
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Merge branch 'master' into jfy133-patch
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2022-03-02 08:28:22 +01:00 |
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James A. Fellows Yates
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46f046d477
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Update eva.config
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2022-02-28 14:00:37 +01:00 |
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James Fellows Yates
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88ddc9eee7
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fffff
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2022-02-10 11:34:57 +01:00 |
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James Fellows Yates
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d7d0f5cecc
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Change base time
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2022-02-10 11:32:49 +01:00 |
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James Fellows Yates
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dbd78f8075
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Re add .
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2022-02-10 11:26:18 +01:00 |
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James Fellows Yates
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dd94895f16
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remove quotes
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2022-02-10 11:22:45 +01:00 |
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James Fellows Yates
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39c2d9b25b
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Oops
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2022-02-10 11:19:16 +01:00 |
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James Fellows Yates
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c0ee3225ad
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Add times for 365d
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2022-02-10 11:02:52 +01:00 |
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Thiseas C. Lamnidis
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fa4075c2a0
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Removed all time limits
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2022-02-10 10:00:18 +01:00 |
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James A. Fellows Yates
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2b06293f64
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Read add empty BAM exit code for qualitmap 255
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2022-02-08 11:15:17 +01:00 |
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James A. Fellows Yates
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8c5a54ac9f
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Update conf/pipeline/eager/eva.config
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2022-02-06 19:37:53 +01:00 |
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James A. Fellows Yates
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aa525c6ebf
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Allow exit code 1 retry for all java processes
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2022-02-06 09:07:53 +01:00 |
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James A. Fellows Yates
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81fe720b00
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Update eva.config
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2022-02-04 09:31:33 +01:00 |
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James A. Fellows Yates
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86a9042eac
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Update eva.config
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2022-02-04 09:25:01 +01:00 |
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James A. Fellows Yates
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50aafc6410
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Update eva.config
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2022-02-03 17:03:10 +01:00 |
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James A. Fellows Yates
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e02196d6ad
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Update eva.config
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2022-02-03 17:02:34 +01:00 |
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James A. Fellows Yates
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0e41349324
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Update eva.config
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2022-02-03 17:01:54 +01:00 |
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James Fellows Yates
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2562a2f563
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Remove virtual free
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2022-02-02 08:06:00 +01:00 |
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James A. Fellows Yates
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8739aabbf0
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Bump markduplicates by default
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2022-02-02 08:00:13 +01:00 |
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James A. Fellows Yates
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5fd5c43906
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Update eva.config
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2022-01-14 07:03:05 +01:00 |
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James A. Fellows Yates
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55f452d81e
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Update eva.config
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2021-12-07 09:27:28 +01:00 |
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James Fellows Yates
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e8252ad61c
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Reintroduce bionode8, bump overhead for flagstat
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2021-12-03 08:36:31 +01:00 |
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James Fellows Yates
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06b40798c0
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Exclude bionode8
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2021-12-02 10:35:35 +01:00 |
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James A. Fellows Yates
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ffdb0a937f
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Take previous working one I think
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2021-10-18 10:58:06 +02:00 |
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James A. Fellows Yates
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b269a577e6
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Revert 1240k
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2021-10-18 10:52:28 +02:00 |
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Thiseas C. Lamnidis
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e741ecb7a7
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Update eva.config
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2021-10-13 13:04:41 +02:00 |
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Thiseas C. Lamnidis
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92648c1c1f
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added 1240k profile
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2021-10-12 15:12:49 +02:00 |
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pierrespc
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035ab61f61
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added unlimitedtime profile to maestro; changed cache for bwa process
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2021-10-08 09:05:46 +02:00 |
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pierrespc
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1621585558
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improving documentation
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2021-10-04 16:08:33 +02:00 |
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pierrespc
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e5d4a357c5
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clean doc
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2021-10-04 15:08:01 +02:00 |
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pierrespc
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f6266879d6
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edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet
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2021-09-29 13:47:35 +02:00 |
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pierrespc
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b71df6fe57
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renamed eager pipeline config file
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2021-09-29 13:22:07 +02:00 |
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pierrespc
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9ea3e2096a
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long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes
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2021-09-29 13:11:14 +02:00 |
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James A. Fellows Yates
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a7b1183065
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Remove 1CPU for host removal fastq
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2021-09-14 11:52:21 +02:00 |
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James A. Fellows Yates
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7c639ac934
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Bump lib merge further
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2021-09-09 14:47:20 +02:00 |
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James A. Fellows Yates
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0603aba342
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Remove debugging stuff
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2021-09-09 13:54:01 +02:00 |
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James A. Fellows Yates
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7ec12b6736
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Update eva.config
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2021-09-09 13:10:05 +02:00 |
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James A. Fellows Yates
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4286a3a342
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Bump additional library merge memor
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2021-09-08 15:16:40 +02:00 |
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James A. Fellows Yates
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59a0901b68
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Add library merge steps to have overhead
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2021-09-05 12:07:53 +02:00 |
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James A. Fellows Yates
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94cbb031c6
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Update eva.config
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2021-08-30 13:29:44 +02:00 |
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James A. Fellows Yates
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5fbd938bc1
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Export user env too
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2021-08-27 10:08:20 +02:00 |
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James A. Fellows Yates
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bcb844f896
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Merge pull request #268 from jfy133/master
Delete SHH profiles due to decommissioning
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2021-08-23 14:08:13 +02:00 |
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James Fellows Yates
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59af7f0eee
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Delete SHH profiles due to decommissioning
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2021-08-20 10:15:39 +02:00 |
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James A. Fellows Yates
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6701354060
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Add genotyping_ug to SGE fixes
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2021-08-20 10:11:11 +02:00 |
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James Fellows Yates
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b0e344846d
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Changes after code review from @aidaanva
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2021-08-04 10:37:49 +02:00 |
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James Fellows Yates
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76fc461670
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Try new strategy for SGE/JAVA bs
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2021-08-04 10:14:56 +02:00 |
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James A. Fellows Yates
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00491de038
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Update eva.config
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2021-08-03 13:54:14 +02:00 |
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James A. Fellows Yates
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5f4b915ae8
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Update eva.config
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2021-06-29 11:31:00 +02:00 |
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