MaxUlysse
a8d338d2aa
Merge branch 'Uppmax' of github.com:MaxUlysse/nf-core_configs into Uppmax
2020-02-24 14:37:27 +01:00
MaxUlysse
9f74e88041
update file
2020-02-24 14:36:45 +01:00
Maxime Garcia
9b897345da
Update conf/pipeline/sarek/uppmax.config
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Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
2020-02-21 08:16:31 +01:00
Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax
2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645
add UPPMAX specific sarek config
2020-02-20 17:14:18 +01:00
Daniel Straub
744db30da4
Update binac.config
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This is now close to optimal I think.
2020-02-19 11:27:02 +01:00
marchoeppner
0830203b70
Adding new CCGA Med Cluster to profiles
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Updating README and fixing linting errors in CCGA_MED profile
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
Fixing order in profile queue and removed leading slash from readme for ccga profile docs
2020-02-11 11:12:51 +01:00
Daniel Straub
b7be65a31e
Cleanup config
2020-02-07 14:53:43 +01:00
Daniel Straub
7346bffdc8
Update binac.config
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Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
2020-01-28 08:48:34 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max
2019-12-21 20:55:54 +01:00
drpatelh
67c231d05c
Change igenomes path
2019-12-18 10:54:23 +00:00
drpatelh
089b5b8e3b
Update config
2019-12-12 13:44:37 +00:00
drpatelh
65c5668568
Update config
2019-12-12 13:02:44 +00:00
Maxime Garcia
d36172d4cf
Merge pull request #110 from MaxUlysse/MUNIN
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fix issue with withLabel selector
2019-12-12 13:03:23 +01:00
MaxUlysse
2bf66514c5
fix issue with withLabel selector
2019-12-12 11:50:10 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC
2019-12-11 16:09:44 +01:00
Alexander Peltzer
49cd35918a
Remove whitespace
2019-12-11 15:59:58 +01:00
Alexander Peltzer
5e6981d0ee
Export TZ in binac config
2019-12-11 15:59:25 +01:00
Alexander Peltzer
ac90acf470
Update envWhiteList for Binac Profile for testing purposes
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Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
2019-12-11 14:26:57 +01:00
James A. Fellows Yates
0beb98696f
Merge branch 'master' into master
2019-12-06 19:31:24 +01:00
James A. Fellows Yates
8747be8120
More tweaks, nextflow appears to add a little extra?
2019-12-06 19:27:16 +01:00
James A. Fellows Yates
5c6760b2f0
Tweak back again
2019-12-06 19:25:07 +01:00
James A. Fellows Yates
46f6d20a77
Put parameters back to correct levels
2019-12-06 19:13:29 +01:00
James A. Fellows Yates
18931763fa
Add space?
2019-12-06 19:11:08 +01:00
James A. Fellows Yates
f59443daf0
Update shh.config
2019-12-06 19:09:20 +01:00
James A. Fellows Yates
1ab1370872
Try to make resources satisfiable
2019-12-06 19:06:05 +01:00
James A. Fellows Yates
6e596d1730
Fix stupid wrong bracket typo -.-
2019-12-06 18:37:39 +01:00
James A. Fellows Yates
b28e1a0905
Wrong bracket typo fix -.-
2019-12-06 18:34:18 +01:00
Alexander Peltzer
1f7940c2ee
Merge pull request #104 from jfy133/master
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Attempt to fix process specific configs with pipeline specific configs
2019-12-06 17:16:37 +01:00
jfy133
e8b4675692
Cleanup and tweaking
2019-12-06 13:17:31 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX
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Improve UPPMAX configs
2019-12-06 10:52:44 +01:00
Maxime Garcia
14864bb80b
Update conf/uppmax.config
2019-12-06 10:31:56 +01:00
Alexander Peltzer
da547b4ce3
Merge pull request #102 from phue/cbe_singularity
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cbe: load singularity/3.4.1
2019-12-06 10:21:55 +01:00
James A. Fellows Yates
0033b74e4e
Update shh.config
2019-12-05 18:08:39 +01:00
James A. Fellows Yates
dc0f1dfb40
Update shh.config
2019-12-05 17:58:49 +01:00
James A. Fellows Yates
b1a8b45aa0
Maybe typo?
2019-12-05 17:52:53 +01:00
jfy133
731372dac2
Added SHH specific EAGER configuration
2019-12-05 17:01:10 +01:00
phue
381c60e7b7
cbe: load singularity/3.4.1
2019-12-05 16:06:32 +01:00
MaxUlysse
a63ec24626
Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX
2019-12-05 15:18:04 +01:00
MaxUlysse
99afe86ea9
update docs
2019-12-05 15:18:01 +01:00
MaxUlysse
f41d325873
automatic configs work on all nodes
2019-12-05 15:07:59 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX
2019-12-05 12:52:34 +01:00
Alexander Peltzer
9cdb915efb
Merge pull request #101 from jfy133/master
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Condensing SHH profile(s) with sub-profiles
2019-12-05 12:51:31 +01:00
MaxUlysse
cf6e00d9f5
better match for hostname
2019-12-05 12:46:32 +01:00
MaxUlysse
20e451be3b
actually define hostname
2019-12-05 12:45:30 +01:00
MaxUlysse
0211b33a55
trying automatic configuration based on hostname
2019-12-05 12:41:18 +01:00
James A. Fellows Yates
842642a2bb
Apply suggestions from code review
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Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-12-05 12:23:36 +01:00
James A. Fellows Yates
678a3841b6
Update conf/shh.config
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Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-12-05 12:23:06 +01:00
jfy133
54dafbcfa3
Condensing SHH profiles following https://github.com/nf-core/configs/pull/100
2019-12-05 12:09:11 +01:00
MaxUlysse
cdbdbee0eb
replace -profile uppmax_devel by -profile uppmax,devel
2019-12-05 11:49:44 +01:00